Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4475
         (754 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    24   1.3  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   5.4  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   5.4  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    22   5.4  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   7.1  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   7.1  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    22   7.1  
AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex det...    21   9.4  
AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex det...    21   9.4  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   9.4  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 573 IASQATASGNTPLHCTFNKKLYKCN 647
           IA++   + N P+H T  K +  CN
Sbjct: 432 IANELEDASNIPVHATLEKFMILCN 456


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -3

Query: 230 TPYQQKKNDAITARQYLKNIDVFMNR*FV 144
           T      N A+    Y+K+IDV++   FV
Sbjct: 264 TTLMSSTNAALPKISYVKSIDVYLGTCFV 292


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -3

Query: 230 TPYQQKKNDAITARQYLKNIDVFMNR*FV 144
           T      N A+    Y+K+IDV++   FV
Sbjct: 264 TTLMSSTNAALPKISYVKSIDVYLGTCFV 292


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -3

Query: 230 TPYQQKKNDAITARQYLKNIDVFMNR*FV 144
           T      N A+    Y+K+IDV++   FV
Sbjct: 203 TTLMSSTNAALPKISYVKSIDVYLGTCFV 231


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = -2

Query: 738 RLILCSLPRQPCSSTRCRHVFARFLSKAKK 649
           R+  C L  QP     CR   ++F +++K+
Sbjct: 385 RMQHCELHMQPRKKNCCRSWLSKFPTRSKR 414


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = -2

Query: 738 RLILCSLPRQPCSSTRCRHVFARFLSKAKK 649
           R+  C L  QP     CR   ++F +++K+
Sbjct: 385 RMQHCELHMQPRKKNCCRSWLSKFPTRSKR 414


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +3

Query: 252 SKTILISNKKRSSLELA 302
           SKTI++SNK  SS +++
Sbjct: 97  SKTIILSNKLESSDDIS 113


>AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = +3

Query: 252 SKTILISNKKRSSLELA 302
           SKT+++SNK  SS +++
Sbjct: 97  SKTVILSNKLESSDDIS 113


>AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = +3

Query: 252 SKTILISNKKRSSLELA 302
           SKT+++SNK  SS +++
Sbjct: 97  SKTVILSNKLESSDDIS 113


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +3

Query: 420 LNQMTHHIHMKKQ 458
           L  M HH+H+ KQ
Sbjct: 337 LTAMMHHLHVAKQ 349


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,695
Number of Sequences: 438
Number of extensions: 4089
Number of successful extensions: 14
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23632110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)