Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-4474
(737 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF106592-2|AAK21364.1| 170|Caenorhabditis elegans Ferritin prot... 43 2e-04
AF016447-16|AAG24016.1| 170|Caenorhabditis elegans Ferritin pro... 36 0.030
AC024857-1|AAK31566.2| 869|Caenorhabditis elegans Temporarily a... 31 0.85
U39678-4|AAK39211.2| 330|Caenorhabditis elegans Hypothetical pr... 29 3.4
Z70718-10|CAA94679.1| 512|Caenorhabditis elegans Hypothetical p... 28 6.0
Z68879-11|CAA93090.1| 512|Caenorhabditis elegans Hypothetical p... 28 6.0
AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nucl... 28 6.0
U40933-2|AAL27242.1| 158|Caenorhabditis elegans Hypothetical pr... 28 7.9
>AF106592-2|AAK21364.1| 170|Caenorhabditis elegans Ferritin protein
2 protein.
Length = 170
Score = 43.2 bits (97), Expect = 2e-04
Identities = 34/132 (25%), Positives = 59/132 (44%)
Frame = +2
Query: 305 SLYLKRSYHYLLSASYFNNYQTNREGFAKLFRKLSDDSWEKTIGLIKHVTKRGGKMDFSS 484
++ L SY YL + YF+ AK F++ SD+ E L++ RGG++
Sbjct: 21 NIELYASYVYLSMSFYFDRDDVALPNIAKFFKEQSDEEREHATELMRVQNLRGGRVVLQD 80
Query: 485 HTTLKGDKGSNYTVEVGHEIGALAKALDTQKQLAERIFFIHREVTKNSDLLHDAEITQYI 664
+ D E G + A AL +K E + +H + +DA +T +I
Sbjct: 81 IQKPEND-------EWGTALKAFEAALALEKFNNESLLKLHSTAGNH----NDAHLTDFI 129
Query: 665 EEEFVSQQADTI 700
EE+++ +Q +I
Sbjct: 130 EEKYLDEQVKSI 141
>AF016447-16|AAG24016.1| 170|Caenorhabditis elegans Ferritin
protein 1 protein.
Length = 170
Score = 35.9 bits (79), Expect = 0.030
Identities = 31/129 (24%), Positives = 58/129 (44%)
Frame = +2
Query: 314 LKRSYHYLLSASYFNNYQTNREGFAKLFRKLSDDSWEKTIGLIKHVTKRGGKMDFSSHTT 493
L SY YL +++F+ AK F++ SD+ L++ RGG++ +
Sbjct: 24 LYASYVYLSMSAHFDRDDIALRNIAKFFKEQSDEERGHATELMRIQAVRGGRV--AMQNI 81
Query: 494 LKGDKGSNYTVEVGHEIGALAKALDTQKQLAERIFFIHREVTKNSDLLHDAEITQYIEEE 673
K +K E G + A AL ++ + +H + +DA +T YI+E+
Sbjct: 82 QKPEKD-----EWGTVLEAFEAALALERANNASLLKLHGIAEQR----NDAHLTNYIQEK 132
Query: 674 FVSQQADTI 700
++ +Q +I
Sbjct: 133 YLEEQVHSI 141
>AC024857-1|AAK31566.2| 869|Caenorhabditis elegans Temporarily
assigned gene nameprotein 305 protein.
Length = 869
Score = 31.1 bits (67), Expect = 0.85
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Frame = +2
Query: 473 DFSSHTTLKGDKGSNYTVEVGHEIGALAKALDTQKQLAERIFFIHREVTKNSDLLHDAEI 652
D S+HTT S TVE H++ ++A ++ T + E + FI + + + L+ A
Sbjct: 627 DSSAHTT----PISTRTVESKHDVTSMASSVSTWHEEIEALAFIDGDADEKAMLVQPALK 682
Query: 653 TQYIEEEFVSQQ-ADTIRS 706
T + E S++ A+ IRS
Sbjct: 683 TGWAAMEQASKKDAEVIRS 701
>U39678-4|AAK39211.2| 330|Caenorhabditis elegans Hypothetical
protein C39D10.3a protein.
Length = 330
Score = 29.1 bits (62), Expect = 3.4
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Frame = +1
Query: 178 GRLMLSERRPRMQT----DFKSAALQRVLRPIQGQP 273
GRLML ++ M+T DFKSA L L P+ +P
Sbjct: 115 GRLMLVTKKHHMETDSILDFKSAILPFALDPLSNEP 150
>Z70718-10|CAA94679.1| 512|Caenorhabditis elegans Hypothetical
protein C04G2.11 protein.
Length = 512
Score = 28.3 bits (60), Expect = 6.0
Identities = 32/150 (21%), Positives = 63/150 (42%)
Frame = +2
Query: 176 EEDSCYQNVDQGCRRTLSLPHCSAYYGQFKDNHVVANELKALASLYLKRSYHYLLSASYF 355
+ D+C NV + +L CS G+F+ + +E+K+ + L ++ +
Sbjct: 50 DSDNCSFNVHYITKESLFPTECSQIIGRFRIDQ--NSEMKSEQLITLFKNVLQIRGVLQI 107
Query: 356 NNYQTNREGFAKLFRKLSDDSWEKTIGLIKHVTKRGGKMDFSSHTTLKGDKGSNYTVEVG 535
N Q F K + ++ D +K + ++ + TK ++ SS + SN VE+
Sbjct: 108 WNTQLTSAPFMKNIQNITGDPLDKGLSILNN-TKL-NNLNISSLS------NSNNIVEIK 159
Query: 536 HEIGALAKALDTQKQLAERIFFIHREVTKN 625
+ L + +FF R ++KN
Sbjct: 160 NNPNL---NLQKMCSIIHEVFFTRRSISKN 186
>Z68879-11|CAA93090.1| 512|Caenorhabditis elegans Hypothetical
protein C04G2.11 protein.
Length = 512
Score = 28.3 bits (60), Expect = 6.0
Identities = 32/150 (21%), Positives = 63/150 (42%)
Frame = +2
Query: 176 EEDSCYQNVDQGCRRTLSLPHCSAYYGQFKDNHVVANELKALASLYLKRSYHYLLSASYF 355
+ D+C NV + +L CS G+F+ + +E+K+ + L ++ +
Sbjct: 50 DSDNCSFNVHYITKESLFPTECSQIIGRFRIDQ--NSEMKSEQLITLFKNVLQIRGVLQI 107
Query: 356 NNYQTNREGFAKLFRKLSDDSWEKTIGLIKHVTKRGGKMDFSSHTTLKGDKGSNYTVEVG 535
N Q F K + ++ D +K + ++ + TK ++ SS + SN VE+
Sbjct: 108 WNTQLTSAPFMKNIQNITGDPLDKGLSILNN-TKL-NNLNISSLS------NSNNIVEIK 159
Query: 536 HEIGALAKALDTQKQLAERIFFIHREVTKN 625
+ L + +FF R ++KN
Sbjct: 160 NNPNL---NLQKMCSIIHEVFFTRRSISKN 186
>AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nuclear
anchorage protein1 protein.
Length = 8545
Score = 28.3 bits (60), Expect = 6.0
Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 1/93 (1%)
Frame = +2
Query: 449 VTKRGGKMDFSSHTTLKGDKGSNYTVEVGHEIGALAKALDTQKQLAERIFFIHREVTKNS 628
+T+ G D S L D+G + VG ++ ALA +K + + I RE +
Sbjct: 4372 ITREDGGDDNKSPDELIDDRGRSTGSAVGDKLAALAAFNAARKNAEDALLDITREDGGDD 4431
Query: 629 DLLHDAEITQYI-EEEFVSQQADTIRSPRGSHL 724
+ D I +EE V++ DT+ + L
Sbjct: 4432 NKSPDELIDDLAKKEETVAKLLDTVSGVKPDEL 4464
>U40933-2|AAL27242.1| 158|Caenorhabditis elegans Hypothetical
protein F20D12.7 protein.
Length = 158
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -2
Query: 397 EELRESFPVRLVVVEVGGRQEIMVGTFQIQ*G 302
EE+ E V LV++ +GGR +VGT ++ G
Sbjct: 87 EEITEPSSVLLVMITMGGRMANVVGTMKLYKG 118
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,890,575
Number of Sequences: 27780
Number of extensions: 321134
Number of successful extensions: 946
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 946
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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