Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4473
         (745 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    29   0.70 
SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual      27   3.7  
SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces...    26   6.5  
SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ...    26   6.5  
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|...    25   8.6  

>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
            Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 29.1 bits (62), Expect = 0.70
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = -1

Query: 163  NRSDSNSKIRGLVKLKTALIH*SIKYTKQRDRCYTSLRMD 44
            N +D +S+I G   LK+ LIH   +   Q  RC+  L++D
Sbjct: 1950 NNADEDSEIVGSGILKSKLIHPLKRKVAQVRRCFQELQLD 1989


>SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -2

Query: 306 VCIVITEIDSIYT*IFPNNTIKLHVVQLRTNL 211
           +CI  +++ S++  I PNN  K+ V QL  +L
Sbjct: 300 LCIGPSDLVSVFVSIMPNNGSKIRVQQLSLSL 331


>SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 404

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = -1

Query: 358 RGIFICNPGCPLVSSFH 308
           RG+FIC  GCP   SFH
Sbjct: 126 RGLFICCEGCP--CSFH 140


>SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 632

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 16/58 (27%), Positives = 26/58 (44%)
 Frame = -1

Query: 454 HSTILFPLQFTIFKGFIGARKILGDCNIFLPVRGIFICNPGCPLVSSFHSLYRNNRNR 281
           HS+IL PL+   FK F+   +I+     F+    +  C       + + S+ RN   R
Sbjct: 172 HSSILRPLETLNFKRFLFGNEIMSKTRAFVMFVSLKHCEDCFHWEAVWSSITRNTDER 229


>SPBC1826.01c |mot1||TATA-binding protein associated factor
           Mot1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1953

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = -3

Query: 275 YTLKSFLTIQSSCTW 231
           Y L  F+++Q+SC+W
Sbjct: 635 YALTKFISVQTSCSW 649


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,841,022
Number of Sequences: 5004
Number of extensions: 58082
Number of successful extensions: 159
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)