Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4473
         (745 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014134-405|AAF51258.2|  459|Drosophila melanogaster CG9870-PA ...    30   3.8  
AY071247-1|AAL48869.1|  504|Drosophila melanogaster RE28850p pro...    29   6.7  
AE014296-341|AAF47557.1|  504|Drosophila melanogaster CG18173-PA...    29   6.7  

>AE014134-405|AAF51258.2|  459|Drosophila melanogaster CG9870-PA
           protein.
          Length = 459

 Score = 29.9 bits (64), Expect = 3.8
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
 Frame = -3

Query: 644 GYISQHLEGR---HKGMRVKHISSYFTRWKSKRDNLLLSKAIRKMSRFFY*KMRNW 486
           G+ S + EG    H  + +  +S YF +W + RD+L     IRK+    +  +  W
Sbjct: 274 GFFSANREGLSSLHGCVALYLLSIYFAKWYTSRDSLTYQGLIRKLKSILFVAILCW 329


>AY071247-1|AAL48869.1|  504|Drosophila melanogaster RE28850p
           protein.
          Length = 504

 Score = 29.1 bits (62), Expect = 6.7
 Identities = 20/63 (31%), Positives = 28/63 (44%)
 Frame = -3

Query: 590 ISSYFTRWKSKRDNLLLSKAIRKMSRFFY*KMRNW*SXXXXXXKTAFYDTISSSIYNLQR 411
           +S Y  RW   +  L  S+ +RK+ R FY  +  W S       +A+   IS    NL  
Sbjct: 327 LSIYVNRWMVAKSLLTYSEFVRKLRRLFYLVLILWTS----FVISAYEIGISRVTCNLGY 382

Query: 410 VYW 402
           V W
Sbjct: 383 VIW 385


>AE014296-341|AAF47557.1|  504|Drosophila melanogaster CG18173-PA
           protein.
          Length = 504

 Score = 29.1 bits (62), Expect = 6.7
 Identities = 20/63 (31%), Positives = 28/63 (44%)
 Frame = -3

Query: 590 ISSYFTRWKSKRDNLLLSKAIRKMSRFFY*KMRNW*SXXXXXXKTAFYDTISSSIYNLQR 411
           +S Y  RW   +  L  S+ +RK+ R FY  +  W S       +A+   IS    NL  
Sbjct: 327 LSIYVNRWMVAKSLLTYSEFVRKLRRLFYLVLILWTS----FVISAYEIGISRVTCNLGY 382

Query: 410 VYW 402
           V W
Sbjct: 383 VIW 385


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,914,952
Number of Sequences: 53049
Number of extensions: 571004
Number of successful extensions: 991
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 950
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 991
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3375989364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)