Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4471
         (792 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0985 - 7646772-7647451,7647957-7648107                           28   9.8  
03_05_0155 - 21307001-21307239,21308217-21308320,21308564-213087...    28   9.8  

>06_01_0985 - 7646772-7647451,7647957-7648107
          Length = 276

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +2

Query: 146 YSEKCNAVSKILKKKALCVITNIINDSLVASSALNLLDL 262
           + E+C  V    +++ALC         ++ S AL +LD+
Sbjct: 205 FEEECKVVGNYAEQQALCTCGQFERTGILCSHALKVLDV 243


>03_05_0155 -
           21307001-21307239,21308217-21308320,21308564-21308772,
           21308773-21308838,21308933-21308997,21309716-21309942,
           21310156-21310269,21310515-21310522,21310964-21311053,
           21311167-21311359,21312934-21313024,21313364-21313496,
           21314756-21314896,21315017-21315078,21315159-21315246,
           21315523-21315952,21316067-21316173
          Length = 788

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +3

Query: 63  ITFENKPIKINSKHTH-KNF*HILMPNNYILKNATPFQKY 179
           +TFEN+P+   SKH   +NF H    N Y  K   P  +Y
Sbjct: 680 LTFENQPLLAGSKHVKVRNFLH----NCYSKKEKEPGDRY 715


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,807,389
Number of Sequences: 37544
Number of extensions: 428289
Number of successful extensions: 723
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 723
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)