Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4469
         (602 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0779 - 28023735-28024058,28024520-28024618,28024704-280249...    29   3.7  
06_03_0259 - 18851809-18852561,18852659-18852895                       28   5.0  
01_06_0931 - 33139383-33139580,33139748-33139870,33142520-331428...    28   5.0  
04_04_0588 - 26412487-26413887                                         28   6.5  

>04_04_0779 -
           28023735-28024058,28024520-28024618,28024704-28024940,
           28025227-28025334,28025427-28025486,28025813-28025888,
           28025984-28026144,28026374-28026436,28026543-28026630,
           28026872-28027612,28027695-28028239
          Length = 833

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +1

Query: 55  CRSEAAFSSTCTYIRKKLLLGSGG 126
           CRS A FS  C Y +K  L+G GG
Sbjct: 688 CRSSAKFSDGCAY-KKYFLIGIGG 710


>06_03_0259 - 18851809-18852561,18852659-18852895
          Length = 329

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +2

Query: 224 SLTLPLALLKSMGDGNHSPSGGPYA-HLPIRAIKKTSAEI 340
           SL+L LA+L S G+G+H P   P A  L  +  +KT   +
Sbjct: 11  SLSLLLAVLASTGEGSHQPVVMPVAMELSAKYYRKTCPNV 50


>01_06_0931 -
           33139383-33139580,33139748-33139870,33142520-33142891,
           33143380-33143450,33143769-33143810,33143895-33143967,
           33144518-33144679,33144778-33144878,33144992-33145114,
           33145296-33145689
          Length = 552

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = +2

Query: 239 LALLKSMGDGNHSPSGGPY-AHLPIRAIKKTSAEII 343
           LALL  MGDG+H  S  PY  +L +R ++ +  +++
Sbjct: 466 LALLMKMGDGSHVKS--PYVTYLKVRCLRLSPGQLV 499


>04_04_0588 - 26412487-26413887
          Length = 466

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/52 (26%), Positives = 23/52 (44%)
 Frame = +2

Query: 206 LGRS*NSLTLPLALLKSMGDGNHSPSGGPYAHLPIRAIKKTSAEIIPPTLRH 361
           +GRS + L    + L +      SP     +  P+R I  + +   PP+ RH
Sbjct: 52  IGRSPDRLLRSASSLSTSSSAPPSPRSSSASDAPVRVISSSPSSPSPPSARH 103


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,399,346
Number of Sequences: 37544
Number of extensions: 320388
Number of successful extensions: 697
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 697
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)