Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4465
         (399 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces pombe...    26   1.9  
SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subuni...    25   4.3  
SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    25   5.7  

>SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 523

 Score = 26.2 bits (55), Expect = 1.9
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +1

Query: 28  SSFFIHSRRMPGGVEFIHSTWKPLRSFHSVF 120
           S+F  HS+  P      HS ++P ++ HS+F
Sbjct: 312 SNFLSHSKEPPLLSTAHHSAYRPSKNIHSMF 342


>SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subunit
           Apc5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 737

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 10/36 (27%), Positives = 23/36 (63%)
 Frame = +3

Query: 285 SHLPTRDNKHVFYTLTYIKIYSLLIFSNYNLIYTNI 392
           SHLP+   ++  Y+L + +++SL  F + + I+ ++
Sbjct: 77  SHLPSSIEEYSVYSLLHERLWSLHSFEDIHEIFISL 112


>SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 497

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -3

Query: 274 PNGEGYRRPWTSAMPGVYPSRWSTTPTG 191
           P G GY++P     PG  PS ++   TG
Sbjct: 459 PPGFGYQQPSFPYSPGFPPSAYNQNRTG 486


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,819,776
Number of Sequences: 5004
Number of extensions: 39890
Number of successful extensions: 94
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)