Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-4465
(399 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0458 + 3291563-3291733,3292082-3292769,3292847-3293363,329... 29 1.0
10_02_0137 - 5730778-5730873,5732137-5732334,5732413-5732625,573... 29 1.4
11_05_0058 + 18719852-18719929,18720032-18720889,18720969-187211... 29 1.8
11_06_0727 - 26709399-26710863,26713529-26713898,26714115-26714421 28 3.1
11_01_0399 - 3015654-3015702,3016160-3017202 28 3.1
05_06_0139 + 25952523-25952610,25952736-25953288,25953417-259539... 28 3.1
03_02_0445 - 8551912-8552047,8552729-8552896,8553785-8554068,855... 27 4.1
08_01_0631 - 5473382-5474135,5474767-5475119,5475481-5475543 27 7.2
04_03_1049 + 22015053-22015083,22015770-22015885,22016013-220161... 27 7.2
03_05_0516 + 25115623-25115994 27 7.2
09_02_0329 + 7311721-7311834,7312252-7312683 26 9.5
04_03_0199 - 12559351-12559433,12559693-12559827,12560260-125604... 26 9.5
01_02_0098 - 11087875-11089110,11091744-11092022 26 9.5
>02_01_0458 +
3291563-3291733,3292082-3292769,3292847-3293363,
3293438-3293637,3294137-3294372,3294469-3295302
Length = 881
Score = 29.5 bits (63), Expect = 1.0
Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Frame = +1
Query: 7 GTQDPIHSSFFIHSRRMPGGVEFIHSTWKPL-RSFHSVFPADLFCSSSTGFPECFDVS 177
G Q H + +PG +H PL + H V P++ S S FP CF S
Sbjct: 269 GEQRDDHPLLHLQFSNLPGSSPDVHVPASPLHKDDHGVRPSNAGVSMSKCFPCCFKTS 326
>10_02_0137 -
5730778-5730873,5732137-5732334,5732413-5732625,
5732748-5732870,5733726-5733841,5734530-5734897,
5735498-5735649,5736557-5736715,5737773-5737946
Length = 532
Score = 29.1 bits (62), Expect = 1.4
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +2
Query: 44 IRAACQGE*SSSILPGNHCVHSTVC 118
++AAC+G S S L G C H+T+C
Sbjct: 8 LKAACEGCGSPSDLYGTSCKHTTLC 32
>11_05_0058 +
18719852-18719929,18720032-18720889,18720969-18721118,
18722248-18722496,18722531-18722575,18722576-18722638
Length = 480
Score = 28.7 bits (61), Expect = 1.8
Identities = 9/28 (32%), Positives = 19/28 (67%)
Frame = +3
Query: 291 LPTRDNKHVFYTLTYIKIYSLLIFSNYN 374
+PTRD +H F+ L ++++ +++ YN
Sbjct: 315 IPTRDPRHRFHCLKHLQLKMIMLSKKYN 342
>11_06_0727 - 26709399-26710863,26713529-26713898,26714115-26714421
Length = 713
Score = 27.9 bits (59), Expect = 3.1
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +3
Query: 270 LGGPYSHLPTRDNKHVFYTLTYIKIYSLLIFSNYNLIYTNII 395
LGG Y+ RD++H Y L I + IF + L+ +N I
Sbjct: 178 LGGAYAAGSCRDSRHTGYVLGLIVPVLVCIFLQWFLVGSNAI 219
>11_01_0399 - 3015654-3015702,3016160-3017202
Length = 363
Score = 27.9 bits (59), Expect = 3.1
Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +2
Query: 77 SILPGNHCVHSTVCFQQ-IYFAPPLRGFLNALTYPLSN*ARGSGRPAAWVYPW 232
++LP NH H T ++FA + FL A+ P + +P + ++ W
Sbjct: 71 ALLPPNHPYHYTCGLPNFVFFAMAMVSFLYAVIVPFLLWRAAADKPTSLIWTW 123
>05_06_0139 +
25952523-25952610,25952736-25953288,25953417-25953913,
25953942-25953955
Length = 383
Score = 27.9 bits (59), Expect = 3.1
Identities = 24/70 (34%), Positives = 31/70 (44%), Gaps = 5/70 (7%)
Frame = -3
Query: 337 IYVSV*KTCLLSLVGR*EYGPP-NGEGYRRPWTSA----MPGVYPSRWSTTPTGLV*QRI 173
+Y V +T LSL GR +GP N E R P +P + P W+ T + Q I
Sbjct: 186 LYPQVTETQGLSLFGRWNFGPTSNTEIIRYPDDPHDREWVPWINPFDWTVISTTTMVQNI 245
Query: 172 RQSIQETP*R 143
I E P R
Sbjct: 246 ENDIFEAPSR 255
>03_02_0445 - 8551912-8552047,8552729-8552896,8553785-8554068,
8554143-8555386,8556901-8556967,8557059-8557150,
8557269-8557480,8558541-8558623,8559092-8559122,
8559770-8559951,8560557-8560616,8561092-8561289,
8561485-8561539,8562740-8562855,8563012-8563176,
8563310-8563483,8564134-8564333,8564778-8564882,
8565063-8565126,8566452-8566718
Length = 1300
Score = 27.5 bits (58), Expect = 4.1
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +1
Query: 67 VEFIHSTWKPLRSFHSVFPADL 132
VE + TW LR H V P D+
Sbjct: 1049 VEHVQDTWNRLRQCHPVLPCDM 1070
>08_01_0631 - 5473382-5474135,5474767-5475119,5475481-5475543
Length = 389
Score = 26.6 bits (56), Expect = 7.2
Identities = 8/23 (34%), Positives = 16/23 (69%)
Frame = +1
Query: 181 VKLGPWEW*TSGLGIPLALLKSM 249
++ GPW+W ++ G+ A+ +SM
Sbjct: 231 LEYGPWDWPSNNNGVAFAIAESM 253
>04_03_1049 +
22015053-22015083,22015770-22015885,22016013-22016108,
22016229-22016285,22016468-22016620,22016754-22016838,
22017097-22017187,22017324-22017488,22017813-22017932,
22018020-22018104,22018234-22018402,22019055-22019173,
22019250-22019440,22019746-22019957,22020905-22021500,
22022538-22022658,22023439-22023868,22024412-22024797,
22024976-22025071,22025380-22025432,22026915-22027061,
22027139-22027309,22027880-22027962,22028049-22028247,
22028668-22028789,22029752-22029818,22029960-22030010,
22030768-22031001,22031263-22031451,22032455-22032646,
22032742-22032936
Length = 1673
Score = 26.6 bits (56), Expect = 7.2
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = -3
Query: 280 GPPNGEGYRRPWTSAMPGVYPSRWSTTPTGLV*QRIRQSI 161
GPP GEG RR T +P V + + G V + RQ +
Sbjct: 757 GPPFGEGNRRRSTLVLPHVRSAPFHAVVPGAVGGQRRQIV 796
>03_05_0516 + 25115623-25115994
Length = 123
Score = 26.6 bits (56), Expect = 7.2
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = -3
Query: 265 EGYRRPWTSAMPGVYPSRWSTTPTGL 188
EGY +PW A+ + RWS L
Sbjct: 25 EGYGKPWVKALQWQWGWRWSLAEAAL 50
>09_02_0329 + 7311721-7311834,7312252-7312683
Length = 181
Score = 26.2 bits (55), Expect = 9.5
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = +3
Query: 201 VVDQRLGYTPGIAEVHGRR*PSPLGGPYSHLPTR 302
V+DQ + T G A G PSPLGG L T+
Sbjct: 128 VLDQDVENTAGAAAREGMFVPSPLGGDTIDLDTQ 161
>04_03_0199 - 12559351-12559433,12559693-12559827,12560260-12560437,
12560848-12561389,12561398-12564827
Length = 1455
Score = 26.2 bits (55), Expect = 9.5
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -1
Query: 96 WFPGRMDELYSPWHAARMNEKR 31
WFPGR+DEL+ +++ R
Sbjct: 1191 WFPGRVDELFPRLERLEIDDPR 1212
>01_02_0098 - 11087875-11089110,11091744-11092022
Length = 504
Score = 26.2 bits (55), Expect = 9.5
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -1
Query: 120 KHTVE*TQWFPGRMDELYSPWHAARMNEKRRMNGILRAE 4
KH ++ W R L HA R++ ++NGI AE
Sbjct: 89 KHALQLMDWMEARGVNLELKHHALRLDLVSKLNGIHAAE 127
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,357,992
Number of Sequences: 37544
Number of extensions: 291091
Number of successful extensions: 737
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 737
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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