Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4465
         (399 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78200-6|CAB01585.2|  524|Caenorhabditis elegans Hypothetical pr...    28   2.8  
U64833-1|AAB04814.1|  857|Caenorhabditis elegans Hypothetical pr...    27   6.5  
AC093703-2|AAL77187.3|  473|Caenorhabditis elegans Hypothetical ...    27   6.5  
U58760-4|AAK31462.2|  678|Caenorhabditis elegans Hypothetical pr...    26   8.7  

>Z78200-6|CAB01585.2|  524|Caenorhabditis elegans Hypothetical
           protein T04H1.8 protein.
          Length = 524

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -3

Query: 139 SKIDLLETHCGMNAVVSR*N 80
           SKIDL  THCG N+++   N
Sbjct: 361 SKIDLFVTHCGQNSLLEAFN 380


>U64833-1|AAB04814.1|  857|Caenorhabditis elegans Hypothetical
           protein B0507.6 protein.
          Length = 857

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 16/70 (22%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
 Frame = -2

Query: 257 PSPMDFSNARGIP----KPLVYHSHGPSLTKDTSKHSGNPVEEEQNRSAGNTLWNERSGF 90
           P+P+  S  +G       P +  +H   L    + HS NP E +   ++  T  N  +  
Sbjct: 142 PNPISQSKNQGTMLKNRPPRLVRTHQSDLANIDTSHSRNPAETKNENTSSRT--NSATSS 199

Query: 89  QVEWMNSTPP 60
           + +++N++ P
Sbjct: 200 RKDYLNTSIP 209


>AC093703-2|AAL77187.3|  473|Caenorhabditis elegans Hypothetical
           protein Y20F4.2 protein.
          Length = 473

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -2

Query: 164 HSGNPVEEEQNRSAGNTLWNERSGFQVEWMNSTPPG 57
           H+G+P+    +    +TL  + SG    +M  +PPG
Sbjct: 275 HNGSPLHSPMDSPHASTLMLDGSGTPSPYMEVSPPG 310


>U58760-4|AAK31462.2|  678|Caenorhabditis elegans Hypothetical
           protein C27A2.4 protein.
          Length = 678

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 15/52 (28%), Positives = 23/52 (44%)
 Frame = -2

Query: 218 KPLVYHSHGPSLTKDTSKHSGNPVEEEQNRSAGNTLWNERSGFQVEWMNSTP 63
           K +V H    SL    S+H+G  +  +      +TL  E+  F  E+   TP
Sbjct: 164 KNIVEHPKVNSLFSKLSEHTGEVINADNFWRIPDTLRCEKQNFPCEFEKKTP 215


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,149,334
Number of Sequences: 27780
Number of extensions: 233708
Number of successful extensions: 418
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 418
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 619699724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)