Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4465
         (399 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synth...    23   1.3  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   3.0  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   6.9  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   6.9  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   6.9  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    20   9.1  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    20   9.1  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               20   9.1  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    20   9.1  

>AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synthase
           16 kDa proteolipidsubunit protein.
          Length = 156

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -1

Query: 273 LMVRVTVAHGLQQCQGYTQAAG 208
           L+V V +A GL++ +GYT   G
Sbjct: 69  LVVAVLIAGGLEEPKGYTLFKG 90


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.8 bits (44), Expect = 3.0
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -2

Query: 191 PSLTKDTSKHSGNPVE 144
           P++T  TS +SG+P E
Sbjct: 363 PNVTLPTSTYSGSPTE 378


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 11/37 (29%), Positives = 16/37 (43%)
 Frame = +1

Query: 58  PGGVEFIHSTWKPLRSFHSVFPADLFCSSSTGFPECF 168
           P     IH   K +   + + P+D+   S   FP CF
Sbjct: 381 PAPQHLIHPG-KDINKLYGMTPSDIDKYSRIVFPVCF 416


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 11/37 (29%), Positives = 16/37 (43%)
 Frame = +1

Query: 58  PGGVEFIHSTWKPLRSFHSVFPADLFCSSSTGFPECF 168
           P     IH   K +   + + P+D+   S   FP CF
Sbjct: 381 PAPQHLIHPG-KDINKLYGMTPSDIDKYSRIVFPVCF 416


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 11/37 (29%), Positives = 16/37 (43%)
 Frame = +1

Query: 58  PGGVEFIHSTWKPLRSFHSVFPADLFCSSSTGFPECF 168
           P     IH   K +   + + P+D+   S   FP CF
Sbjct: 319 PAPQHLIHPG-KDINKLYGMTPSDIDKYSRIVFPVCF 354


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -1

Query: 228 GYTQAAGLPLPRA*FDKGYVKAFRK 154
           GY  +A  PL    F+  Y +AFR+
Sbjct: 370 GYVNSALNPLIYTIFNLDYRRAFRR 394


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -1

Query: 228 GYTQAAGLPLPRA*FDKGYVKAFRK 154
           GY  +A  PL    F+  Y +AFR+
Sbjct: 370 GYVNSALNPLIYTIFNLDYRRAFRR 394


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +1

Query: 187 LGPWEW*TSGLGIPLAL 237
           +G WE  T G+G  L L
Sbjct: 151 MGSWEVYTKGIGAKLLL 167


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -1

Query: 228 GYTQAAGLPLPRA*FDKGYVKAFRK 154
           GY  +A  PL    F+  Y +AFR+
Sbjct: 370 GYVNSALNPLIYTIFNLDYRRAFRR 394


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,581
Number of Sequences: 438
Number of extensions: 2915
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9885360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)