Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4464
         (715 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0020 + 147147-147313,148450-148548,148634-148742,148856-14...    30   2.1  
10_08_0391 + 17486109-17486210,17487032-17487129,17487331-174873...    29   3.7  

>01_01_0020 +
           147147-147313,148450-148548,148634-148742,148856-148927,
           149056-149061,150811-150915,151048-151539,151629-152025,
           152178-153646,154010-154450,154543-155214
          Length = 1342

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +2

Query: 551 HRYRNENADYTGLKHETKTLNPVVTTGPNHDLVVT*FWGAFPYFF 685
           HR RN NA+ T +  + +T++ ++ TG      ++  W  F + F
Sbjct: 689 HRIRNPNAEITLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVF 733


>10_08_0391 +
           17486109-17486210,17487032-17487129,17487331-17487361,
           17487655-17487707,17489254-17489402,17489828-17489898,
           17489988-17490131,17490249-17490309,17492180-17492265,
           17492839-17492926,17494012-17494142,17494266-17494394
          Length = 380

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 17/38 (44%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
 Frame = +2

Query: 494 KYIASGIVWSSGI--K*TIRAHRYRNENADYTGLKHET 601
           K IA+ IV  SGI  +  ++A+R   +NA+ TG+ HET
Sbjct: 268 KLIANLIVMGSGIIGRAMLQAYRKALDNANKTGVAHET 305


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,782,038
Number of Sequences: 37544
Number of extensions: 304360
Number of successful extensions: 520
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 520
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)