Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4463
         (669 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0062 - 448105-448145,448780-448866,449664-449790                 31   1.1  
10_01_0188 - 2086765-2087743,2087774-2088195                           29   2.5  
03_02_0213 + 6480521-6480644,6482347-6482499,6482582-6482980,648...    29   4.4  
01_06_1731 + 39516897-39517632,39517744-39517912,39517985-395184...    29   4.4  
11_04_0285 + 15785283-15785413,15786534-15786689,15786970-157870...    28   7.7  
10_01_0359 + 3956527-3956616,3957623-3957818,3958102-3959418,395...    28   7.7  
06_03_1359 + 29554078-29554375,29554470-29554655,29554768-295549...    28   7.7  
01_05_0634 + 23843152-23843272,23843441-23843628,23843876-238442...    28   7.7  

>02_01_0062 - 448105-448145,448780-448866,449664-449790
          Length = 84

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/56 (25%), Positives = 30/56 (53%)
 Frame = +1

Query: 37  SLILCTIPAVISIIVKDPPPTPNDYKYSYSIEDPTTGDSKSQHEVRHGDLITGAYS 204
           +L+L  +P+ +S+ +  PPP P  +   ++   P  G   ++H V +G    G+++
Sbjct: 2   ALLLLLLPSSLSLALSPPPPPPPFFPPQWAPPVPGGGGPFAEHGVGYGSGPDGSHN 57


>10_01_0188 - 2086765-2087743,2087774-2088195
          Length = 466

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = +2

Query: 392 HRIIECGFRSCHIILSSRFISQYVMRSKRKTL-YFHTDNISYRPPNDYRIR 541
           H ++E     C  I + + ++Q+ M ++     Y+  D I+Y+PPND  +R
Sbjct: 45  HAVVEEADGRC--ITNPKMLTQFKMLAEIMYRGYYMLDTINYKPPNDEEVR 93


>03_02_0213 +
           6480521-6480644,6482347-6482499,6482582-6482980,
           6483158-6483234,6483990-6485312
          Length = 691

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 16/46 (34%), Positives = 20/46 (43%)
 Frame = +1

Query: 94  PTPNDYKYSYSIEDPTTGDSKSQHEVRHGDLITGAYSVVDPDGRKR 231
           PT ND +Y+ S  D   G  KSQ + R  D   G     DP    +
Sbjct: 156 PTNNDNEYASSANDGAEGSWKSQKKKRDKDDDDGELESGDPSSTSK 201


>01_06_1731 +
           39516897-39517632,39517744-39517912,39517985-39518488,
           39518619-39518747,39519849-39519990,39520082-39520453
          Length = 683

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = +1

Query: 220 GRKRIVEYTADSKNGFKAIVREEPSDTHQPLNPTP 324
           GR+ +VEYT  S  G     R     +HQPL PTP
Sbjct: 285 GRRLVVEYTRPSLPG----PRRRGHVSHQPLAPTP 315


>11_04_0285 +
           15785283-15785413,15786534-15786689,15786970-15787026,
           15787171-15787194,15787362-15787462,15787884-15787969
          Length = 184

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -1

Query: 234 NTLPSVRVYNRVRSCYKISMAYFVLTFTVSRCGV 133
           N + SVRV N + SC+   + + +L+  V R  V
Sbjct: 111 NAVVSVRVSNEISSCFTAQICFALLSMQVRRIDV 144


>10_01_0359 +
           3956527-3956616,3957623-3957818,3958102-3959418,
           3959482-3960445,3960588-3960648,3961500-3961946
          Length = 1024

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 292 SDTHQPLNPTPTLQLQNRNYVDRVNRF 372
           S+ H PL+P+P   L+N  ++ + N F
Sbjct: 321 SNFHHPLSPSPDNSLENLQHMQKENEF 347


>06_03_1359 +
           29554078-29554375,29554470-29554655,29554768-29554923,
           29555557-29555694,29555789-29555909,29556339-29556345
          Length = 301

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/52 (25%), Positives = 20/52 (38%)
 Frame = +1

Query: 16  ALNMLRESLILCTIPAVISIIVKDPPPTPNDYKYSYSIEDPTTGDSKSQHEV 171
           A N        C +PA  +   K PPP P+          P  G + +Q+ +
Sbjct: 14  AANPFHRCADYCPVPAPAAATAKPPPPPPSSRPAQNGTAAPQNGTAAAQNGI 65


>01_05_0634 +
           23843152-23843272,23843441-23843628,23843876-23844205,
           23844319-23844565,23844591-23844668,23844740-23845024,
           23845139-23845225,23845365-23845415,23845625-23845761,
           23845853-23846437
          Length = 702

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +2

Query: 230 VLWNIQQTQKTASKQ*LEKNHRIHINR*TLHRHYS 334
           + W  ++ QK   K+ LEK H +H  R  L +  S
Sbjct: 489 IFWRKKKLQKNGLKKFLEKRHSLHTKRKILGKRIS 523


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,191,290
Number of Sequences: 37544
Number of extensions: 367296
Number of successful extensions: 919
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 889
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 917
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)