Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4462
         (454 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC320.10 |srp72||signal recognition particle subunit Srp72|Sch...    25   4.1  
SPAC25B8.12c |||nucleotide-sugar phosphatase |Schizosaccharomyce...    25   5.4  
SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein Phf1...    24   9.5  

>SPCC320.10 |srp72||signal recognition particle subunit
           Srp72|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 561

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = -2

Query: 288 WPGP-SGILGNETADLCAKDATTTGCMDHYRIYSNDLL 178
           W GP S ++  + A LC  D      MD Y + + DL+
Sbjct: 442 WKGPISELVSCKVAALCYLDKEIESGMDKYLVPTKDLI 479


>SPAC25B8.12c |||nucleotide-sugar phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 303

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = +2

Query: 218 PVVVASLAQRSAVSLPKMPL 277
           P+V+A+  QRSAV L ++PL
Sbjct: 53  PIVLATGKQRSAVDLIRIPL 72


>SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein
           Phf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 461

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 7/39 (17%)
 Frame = +3

Query: 201 CNDPYSQLLWH-------LWHKDLQFHYLKCHWGXATQP 296
           CN PY QL  H       +   D ++  +KC +  A QP
Sbjct: 213 CNSPYHQLCHHPPIDDATVQDVDAEWFCMKCQYRRAKQP 251


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,742,315
Number of Sequences: 5004
Number of extensions: 31830
Number of successful extensions: 69
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)