Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4462
         (454 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0883 + 21279913-21280235,21281066-21281327,21281998-212821...    31   0.57 
11_06_0154 + 20707811-20708210,20709252-20709523                       27   5.3  
07_03_0685 - 20679883-20679927,20680034-20680087,20680179-206803...    27   5.3  

>10_08_0883 +
           21279913-21280235,21281066-21281327,21281998-21282199,
           21282289-21282436,21282541-21283084
          Length = 492

 Score = 30.7 bits (66), Expect = 0.57
 Identities = 12/49 (24%), Positives = 20/49 (40%)
 Frame = +3

Query: 237 WHKDLQFHYLKCHWGXATQPXPLQWFXNGSWKVKFLFLVWKEIKLKXKW 383
           +  D  ++YLK HW     P  +  F +  W   + +  W  + L   W
Sbjct: 255 YQMDASYYYLKLHWHVPCGPNSVITFPSAPWFKPWYWWSWPILPLGLSW 303


>11_06_0154 + 20707811-20708210,20709252-20709523
          Length = 223

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +1

Query: 52  EVAEPRSGRNKALNISVVFTLTKTSLLPTRIPRRKQS 162
           +  E   GRN+A +  +VF   K++ + TR  R++ S
Sbjct: 100 DAGEAEWGRNRAASTCIVFVFWKSATMTTRRDRQEAS 136


>07_03_0685 -
           20679883-20679927,20680034-20680087,20680179-20680390,
           20680476-20680550,20683094-20683168,20686196-20686264,
           20686349-20686502,20686577-20686654,20689102-20689194,
           20689491-20689640,20690134-20690268,20691009-20691098,
           20691412-20691453,20691796-20692053,20692131-20692207,
           20693126-20693186,20693687-20693905,20694936-20695208,
           20695314-20695505,20695841-20696011
          Length = 840

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -3

Query: 341 KFXFPAPIXKPLKWPWLGGXAPV 273
           +F FP+P   PL+W  +G   P+
Sbjct: 44  RFSFPSPSSSPLRWVRVGNLVPL 66


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,353,626
Number of Sequences: 37544
Number of extensions: 208734
Number of successful extensions: 422
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 421
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 883560296
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)