Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4462
         (454 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81102-1|CAB03202.1|  320|Caenorhabditis elegans Hypothetical pr...    29   1.2  
Z49068-5|CAA88863.2|  707|Caenorhabditis elegans Hypothetical pr...    28   2.8  
U97403-7|AAB52475.2|  179|Caenorhabditis elegans Hypothetical pr...    28   2.8  

>Z81102-1|CAB03202.1|  320|Caenorhabditis elegans Hypothetical
           protein M02B1.3 protein.
          Length = 320

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +1

Query: 127 LLPTRIPRRKQSLFSYWE*IIRINSVMIHTASCCGIFGTKICSFI 261
           +L T +  +K  L++YW  ++ ++S+ +HT S   I      S I
Sbjct: 170 VLSTAVLSKKFLLYAYWAMLMEVSSIFLHTRSILHISKLSTTSMI 214


>Z49068-5|CAA88863.2|  707|Caenorhabditis elegans Hypothetical
           protein K01C8.5 protein.
          Length = 707

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = -2

Query: 201 RIYSNDLLPIAKQRLLSSWNSCWQKTSFC*GKHYADIQGFIPPRP 67
           R   +DL+P+A+      WNSC Q           DI+ + PP P
Sbjct: 48  RSSGSDLMPVARFNNFKRWNSCLQHVE----SQPEDIREWDPPPP 88


>U97403-7|AAB52475.2|  179|Caenorhabditis elegans Hypothetical
           protein T10E9.8 protein.
          Length = 179

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 17/43 (39%), Positives = 27/43 (62%)
 Frame = -3

Query: 146 GILVGKRLVFVKVNTTLIFKALFLPDLGSATSKIYINALQVRS 18
           GIL+ +RL F+ ++TT+    +FL D   A S I++ A+  RS
Sbjct: 78  GILMKRRL-FITIHTTITMTLMFLTD-ALAISIIFLMAIGKRS 118


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,657,452
Number of Sequences: 27780
Number of extensions: 180179
Number of successful extensions: 421
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 421
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 799252350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)