Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4461
         (490 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0752 - 10922456-10922644,10922719-10922796,10922888-109230...    27   8.1  
01_01_0562 + 4126368-4128196,4128517-4128715,4128827-4128886,412...    27   8.1  

>03_02_0752 -
           10922456-10922644,10922719-10922796,10922888-10923016,
           10923105-10923152,10923243-10923333,10923517-10923648,
           10923869-10924086,10925121-10925271,10925360-10926009,
           10926715-10926786,10926938-10926985,10927105-10927242,
           10927750-10927756,10928064-10928212
          Length = 699

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +2

Query: 404 EVSSWGFNLGASLTPVPLTHASALGSFS 487
           EV+S+ +N GA++   PL+  S LG F+
Sbjct: 371 EVASYMYNNGAAMAKRPLSGKSILGDFA 398


>01_01_0562 + 4126368-4128196,4128517-4128715,4128827-4128886,
            4129129-4129233,4129987-4130127,4130223-4130285,
            4130925-4131152,4131250-4131333,4132000-4132157,
            4132252-4132777,4133641-4133700,4133904-4134026,
            4134906-4135181,4135282-4135347,4135500-4135631,
            4135977-4136798,4137026-4137306,4137564-4137796,
            4138022-4138260,4138367-4138558,4138808-4139080,
            4139186-4139332
          Length = 2078

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -2

Query: 327  SLKPNIAFHLSGYRYRTSRERRVIYYIVLNY 235
            S KPNI   L+  +     E R++Y ++LN+
Sbjct: 1809 SFKPNIDARLNDLKLTFGPELRIVYPLILNF 1839


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,093,612
Number of Sequences: 37544
Number of extensions: 164313
Number of successful extensions: 285
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 282
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 285
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1011709100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)