Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4458
         (708 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17H9.03c |rdl1||RAD51D-like protein 1|Schizosaccharomyces po...    28   1.1  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    27   2.6  
SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog |Schi...    25   8.0  

>SPAC17H9.03c |rdl1||RAD51D-like protein 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 230

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = -1

Query: 102 GHQCRVKLTSYRYIVYVLGGSMFLKQMYLS 13
           G +CR+    +R  VY+    +++KQ++LS
Sbjct: 113 GRKCRILTRKFRLAVYLSTSLVYIKQLHLS 142


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 18/62 (29%), Positives = 30/62 (48%)
 Frame = +1

Query: 181  TS*MFMGYSNHLTRWAVSSFTHPSNKKKKIEAN*CI*NLEEITDS*NNSSEQAISQVH*R 360
            TS +F GY  H T W ++ F H + K K      C+  L +I    N   ++A  ++  +
Sbjct: 2863 TSFLFRGY--HETAWLINRFAHVARKHKLPSV--CLNQLTKIYTLPNIEIQEAFYKLREQ 2918

Query: 361  IL 366
            +L
Sbjct: 2919 VL 2920


>SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -1

Query: 285 TLICFNFFFFIAWMGERAHSP 223
           TLIC   +F + WM   A  P
Sbjct: 371 TLICITIYFSLLWMNATAGGP 391


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,571,192
Number of Sequences: 5004
Number of extensions: 45195
Number of successful extensions: 112
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)