Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4458
         (708 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83246-1|CAB05842.2|  312|Caenorhabditis elegans Hypothetical pr...    28   7.5  
U80030-13|AAG24169.1|  831|Caenorhabditis elegans Hypothetical p...    27   9.9  

>Z83246-1|CAB05842.2|  312|Caenorhabditis elegans Hypothetical
           protein ZK795.1 protein.
          Length = 312

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = +2

Query: 347 KYTEEYYGVQTVFTKDEERQLI 412
           K T ++YG+QT+F   ++R+ +
Sbjct: 99  KLTADFYGIQTIFVDGQDREFL 120


>U80030-13|AAG24169.1|  831|Caenorhabditis elegans Hypothetical
           protein K12D9.12 protein.
          Length = 831

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -2

Query: 689 FLQENSEFSLLSILIYTNIIKRKDLFVCLFRI 594
           F++ NSE + + +L   N+I+R+ L  C F +
Sbjct: 461 FIKNNSELNEIDVLYRFNMIRREGLKECNFEV 492


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,972,533
Number of Sequences: 27780
Number of extensions: 245112
Number of successful extensions: 536
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 535
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)