Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4454
         (694 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0733 - 19791745-19791906,19792072-19792173,19792246-197923...    30   1.5  
07_01_0736 - 5600201-5600374,5600455-5600563,5601075-5601196,560...    29   4.6  
01_06_1815 - 40064351-40064887,40064987-40065634,40065834-400658...    29   4.6  
07_03_0446 - 18285132-18285221,18285437-18285499,18285805-182858...    28   8.1  

>09_04_0733 -
           19791745-19791906,19792072-19792173,19792246-19792331,
           19792655-19792926,19793430-19793521,19793615-19793730,
           19794206-19794389,19794467-19794599,19794981-19795075
          Length = 413

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = -3

Query: 437 ISYLLSEQWIRHQLDQIVKRVYRWMYTFK--PLYLLS 333
           + +L +  W  H+L+ ++ R Y W   FK  P +L S
Sbjct: 377 LQHLPTRNWAHHELEMVLSRAYMWHTMFKSSPSHLAS 413


>07_01_0736 -
           5600201-5600374,5600455-5600563,5601075-5601196,
           5602859-5602935,5603349-5603487,5604306-5604618,
           5605084-5605394,5607245-5609141,5609239-5609374,
           5609519-5609607,5610424-5610507,5611112-5611191,
           5611312-5611446,5612340-5612585
          Length = 1303

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -3

Query: 353 KPLYLLSYRQRCIQASLRMLPAAHITPVA 267
           +P  L S R     +S+  LPA+H+TPV+
Sbjct: 843 RPWLLQSARHSLAYSSISFLPASHVTPVS 871


>01_06_1815 -
           40064351-40064887,40064987-40065634,40065834-40065890,
           40065921-40065941,40066714-40066941
          Length = 496

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 18/77 (23%), Positives = 34/77 (44%)
 Frame = -3

Query: 326 QRCIQASLRMLPAAHITPVAEHLSR*MCTYKHSTTLKMHSRFTLYVSNPPVIFDH*LNNA 147
           ++   ++ R L   +  PV E      C++KH  ++ + S  +  + N     +H L N 
Sbjct: 116 EKSFSSTFRTLHLVNEIPVNERSHIPECSFKHDDSVAVDSLSSSDLQNQTNRIEHDLVNT 175

Query: 146 LEYTLVWFVTRRRHC*H 96
           +E  LV F +  +   H
Sbjct: 176 VESQLVLFASDNQQLTH 192


>07_03_0446 -
           18285132-18285221,18285437-18285499,18285805-18285867,
           18286079-18286129,18286413-18286506,18286696-18286856,
           18287089-18287145,18287380-18287493,18287934-18287999,
           18288063-18288266,18289207-18289284,18289669-18289788,
           18290425-18290491,18290635-18290735,18290820-18290936,
           18292024-18292107,18292181-18292309,18292385-18292510,
           18292622-18292696,18292814-18292947,18293032-18293137,
           18293220-18293276,18294387-18294573,18295244-18295407,
           18296129-18296353,18296538-18296744,18297043-18297375,
           18297604-18297993
          Length = 1220

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +1

Query: 277 VICAAGSILRLA*-IHLCRYDKRYSGLKVYIHRYTRFTIWSSWCLIHCSL 423
           V+ A  S+ +L   ++L  +   Y  L+V +     F +W   C IHCSL
Sbjct: 821 VLSALDSLSKLVERLYLMSFAFMYDLLEVDLETRHFFFLWCKCCTIHCSL 870


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,625,895
Number of Sequences: 37544
Number of extensions: 366831
Number of successful extensions: 748
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 748
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)