Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4454
         (694 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL031633-13|CAA21027.1|  951|Caenorhabditis elegans Hypothetical...    57   1e-08
AJ132700-1|CAA10736.1|  952|Caenorhabditis elegans centaurin gam...    57   1e-08
AL031633-15|CAD92399.1|  139|Caenorhabditis elegans Hypothetical...    33   0.15 
Z82277-3|CAB05249.2|  495|Caenorhabditis elegans Hypothetical pr...    29   4.2  

>AL031633-13|CAA21027.1|  951|Caenorhabditis elegans Hypothetical
           protein Y39A1A.15b protein.
          Length = 951

 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 26/47 (55%), Positives = 36/47 (76%), Gaps = 2/47 (4%)
 Frame = +3

Query: 321 SLSIRQEIQRFESVHPSIYALYDLVELVPD--PLLAQQIRDHVVAIE 455
           S  IR EIQRFESVHP IY +YDL+ L+PD    +++QIR+ +V++E
Sbjct: 15  SEQIRSEIQRFESVHPCIYQIYDLLNLLPDGCHAISEQIREQIVSVE 61


>AJ132700-1|CAA10736.1|  952|Caenorhabditis elegans centaurin gamma
           1A protein.
          Length = 952

 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 26/47 (55%), Positives = 36/47 (76%), Gaps = 2/47 (4%)
 Frame = +3

Query: 321 SLSIRQEIQRFESVHPSIYALYDLVELVPD--PLLAQQIRDHVVAIE 455
           S  IR EIQRFESVHP IY +YDL+ L+PD    +++QIR+ +V++E
Sbjct: 15  SEQIRSEIQRFESVHPCIYQIYDLLNLLPDGCHAISEQIREQIVSVE 61


>AL031633-15|CAD92399.1|  139|Caenorhabditis elegans Hypothetical
           protein Y39A1A.15d protein.
          Length = 139

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 15/19 (78%), Positives = 15/19 (78%)
 Frame = +3

Query: 321 SLSIRQEIQRFESVHPSIY 377
           S  IR EIQRFESVHP IY
Sbjct: 15  SEQIRSEIQRFESVHPCIY 33


>Z82277-3|CAB05249.2|  495|Caenorhabditis elegans Hypothetical
           protein LLC1.3 protein.
          Length = 495

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 14/39 (35%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
 Frame = +3

Query: 345 QRFESVHPSIYALYDLVELVPDPLLAQQIRDH-VVAIEG 458
           +RF++  PSI+A+ D++E    P+LA +  D  ++ +EG
Sbjct: 326 ERFQTKVPSIFAIGDVIE---GPMLAHKAEDEGILCVEG 361


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,754,580
Number of Sequences: 27780
Number of extensions: 347649
Number of successful extensions: 737
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 737
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)