Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4453
         (466 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16D10.07c |sir2||Sir2 family histone deacetylase Sir2|Schizo...    28   0.61 
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz...    27   1.9  
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb...    26   2.5  
SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase Tpp1|Schi...    25   4.3  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    25   7.5  
SPBC1271.09 |||glycerophosphodiester transporter|Schizosaccharom...    25   7.5  
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni...    25   7.5  
SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr...    25   7.5  
SPBC216.01c ||SPBC713.13c|DNA damage response protein |Schizosac...    25   7.5  
SPAC1B3.02c |||transcription elongation factor, Elf1 family|Schi...    24   9.9  
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa...    24   9.9  
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb...    24   9.9  
SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c...    24   9.9  

>SPBC16D10.07c |sir2||Sir2 family histone deacetylase
           Sir2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 28.3 bits (60), Expect = 0.61
 Identities = 15/38 (39%), Positives = 24/38 (63%)
 Frame = -2

Query: 441 VLRKPGKEDYTSPKSYRPIGLLPVLGKVLERMVVARIK 328
           +L+K G    ++ + +  I LLP+L +VL+R V  RIK
Sbjct: 102 ILKKLGINLPSALEEFEDIDLLPLLKEVLKREVARRIK 139


>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 873

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -1

Query: 292 WLYAPEEHRGRPLYSNKTRTRQVEAEEANCPGV 194
           WLY P  H   P   +  R ++ E E++  P V
Sbjct: 364 WLYGPLLHTSMPSRHHSHRKKEKEKEKSKAPRV 396


>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 779

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = -2

Query: 279 QKSTEDALYTLIKHVQDKLRLKKLIVLVSLDIEGAFDS 166
           +K  E  L TL   V++KL   + +VLV  D+E   DS
Sbjct: 62  EKVVEKVLDTLKAEVEEKLASSQDLVLVDSDMEEQSDS 99


>SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase
           Tpp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 817

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 304 YSPVWLYAPEEHRGRPLYSNKTRTRQ 227
           Y PVWL  PE  +G     N+TR++Q
Sbjct: 134 YVPVWLPGPE--KGSETIINETRSQQ 157


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 24.6 bits (51), Expect = 7.5
 Identities = 9/25 (36%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
 Frame = +2

Query: 257  RASSVLFWGIKPNWRVLSR-GTNCH 328
            R  +   W  KP+W+V++R    CH
Sbjct: 1424 RKKACRLWNFKPHWQVITRIPQYCH 1448


>SPBC1271.09 |||glycerophosphodiester
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 543

 Score = 24.6 bits (51), Expect = 7.5
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = -2

Query: 447 VVVLRKPGKEDYTSPKSYRPIGLLPVLGKVLERM 346
           + +LRK   E+ T  KS + IG++  +G ++ ++
Sbjct: 100 ITILRKLYPEETTHNKSLQDIGMIAYVGTIVGQL 133


>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
           Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1227

 Score = 24.6 bits (51), Expect = 7.5
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = -2

Query: 255 YTLIKHVQDKLRLKKLIVLVSL 190
           Y L KHV D LRL K+   V L
Sbjct: 626 YKLAKHVADVLRLMKIEYAVKL 647


>SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 359

 Score = 24.6 bits (51), Expect = 7.5
 Identities = 16/71 (22%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
 Frame = -2

Query: 312 RLSTRQFGFMPQKSTEDALYTLIKHVQDKLRLKKLIVLVSLD---IEGAFDSAWWPAIKV 142
           RLS++Q G    +  E  + ++++  +D L        ++     +  A    WWPA+ +
Sbjct: 12  RLSSKQGGLSISEGKESNIPSVVEESKDNLEQASADDRLNFGDRILVKAPGYPWWPALLL 71

Query: 141 RLAKERCPVNT 109
           R  + +  +NT
Sbjct: 72  RRKETKDSLNT 82


>SPBC216.01c ||SPBC713.13c|DNA damage response protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 836

 Score = 24.6 bits (51), Expect = 7.5
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = -2

Query: 366 GKVLERMVVARIKWQFVPRLSTRQFGFMPQKSTEDALYTLIKHVQDKL 223
           GKVL+ M+  + +   V   +   F F+  + +ED L  L K+ + +L
Sbjct: 623 GKVLDLMLKVKDQTNLVNSAALEFFEFLRSEGSEDTLDYLNKNYRPQL 670


>SPAC1B3.02c |||transcription elongation factor, Elf1
          family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 107

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = +1

Query: 10 PLDTAFVCLSCAFFPSVPYS 69
          PLDT F CL C    SV  S
Sbjct: 18 PLDTTFTCLFCNHEKSVSCS 37


>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1076

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -3

Query: 464 SGKRQRWWFSENQARKITRAP 402
           S +R +WWF +    K   AP
Sbjct: 912 SSERSKWWFDDGLPAKSIAAP 932


>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1328

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 8/29 (27%), Positives = 20/29 (68%)
 Frame = -2

Query: 285 MPQKSTEDALYTLIKHVQDKLRLKKLIVL 199
           +P++    A++  I+H+ +K++ KKL+ +
Sbjct: 55  LPEEEMYIAIFNYIEHLFEKIKPKKLLYM 83


>SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 767

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
 Frame = -2

Query: 222 RLKKLIVLVSLDIEGAFDSAWWPAIKVRLAKERCPVNTRRLLDSYLDCRKVRVRYAGE-E 46
           R++K I  V+    G F       +  R        + ++LLD  ++C+K +++  G   
Sbjct: 76  RIRKAIAYVNKYASGCFGRVERRLVCTRSISRH---SNQKLLDFCVECKKHKIKCVGNFP 132

Query: 45  CTRETNKG 22
           C R   KG
Sbjct: 133 CGRCLKKG 140


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,956,723
Number of Sequences: 5004
Number of extensions: 38274
Number of successful extensions: 117
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 176367270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)