Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-4453
(466 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X17551-2|CAA35587.1| 888|Drosophila melanogaster protein ( D.me... 88 6e-18
AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein ... 85 3e-17
AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p pro... 85 3e-17
U02279-1|AAA18301.1| 964|Drosophila melanogaster protein ( Dros... 84 8e-17
AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein ... 84 8e-17
AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein ... 84 8e-17
AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein ... 84 8e-17
AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein ... 84 8e-17
AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p pro... 84 1e-16
U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative rever... 83 2e-16
AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein. 82 4e-16
AY089343-1|AAL90081.2| 718|Drosophila melanogaster AT16518p pro... 82 4e-16
AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse tran... 82 4e-16
M22874-2|AAA28675.1| 916|Drosophila melanogaster protein ( D.me... 80 2e-15
AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown prot... 78 5e-15
X51968-2|CAA36227.1| 1021|Drosophila melanogaster protein ( Dros... 77 1e-14
AM040243-1|CAJ13339.1| 656|Drosophila melanogaster pol protein ... 76 3e-14
AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein ... 76 3e-14
AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein ... 76 3e-14
M17214-2|AAA28508.1| 858|Drosophila melanogaster protein ( D.me... 75 4e-14
AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein ... 75 6e-14
AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein. 71 6e-13
AJ278684-2|CAB99192.1| 989|Drosophila melanogaster endonuclease... 71 6e-13
AY060323-1|AAL25362.1| 241|Drosophila melanogaster GH20809p pro... 67 1e-11
M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2 ... 57 1e-08
BT030416-1|ABO52836.1| 831|Drosophila melanogaster IP17195p pro... 32 0.44
EF599121-1|ABQ96885.1| 793|Drosophila melanogaster Crk-associat... 30 1.3
AE014296-17|AAF47335.2| 793|Drosophila melanogaster CG1212-PA, ... 30 1.3
AE014296-988|AAN12103.1| 460|Drosophila melanogaster CG32414-PA... 30 1.8
AE014298-1985|AAS65328.1| 171|Drosophila melanogaster CG33246-P... 29 2.3
AE014297-241|AAG22215.2| 1674|Drosophila melanogaster CG2666-PB,... 28 7.1
AE014297-240|AAS65101.1| 1615|Drosophila melanogaster CG2666-PC,... 28 7.1
AE014297-239|AAN13280.1| 1615|Drosophila melanogaster CG2666-PA,... 28 7.1
>X17551-2|CAA35587.1| 888|Drosophila melanogaster protein (
D.melanogaster white-one mutant DNA with Doc retroposon,
inserted inwhite locuspromoter region. ).
Length = 888
Score = 87.8 bits (208), Expect = 6e-18
Identities = 51/150 (34%), Positives = 78/150 (52%), Gaps = 2/150 (1%)
Frame = -2
Query: 462 WKEATVVVLRKPGKEDYTSPKSYRPIGLLPVLGKVLERMVVARIK--WQFVPRLSTRQFG 289
WK++T+V++ KPGK D T P SYRPI LL L K+ E+M++ RI + L T QFG
Sbjct: 488 WKKSTIVMIPKPGK-DKTQPSSYRPISLLTCLSKLFEKMLLLRISPHLRINNTLPTHQFG 546
Query: 288 FMPQKSTEDALYTLIKHVQDKLRLKKLIVLVSLDIEGAFDSAWWPAIKVRLAKERCPVNT 109
F + T + + + ++ ++ + LD+ AFD W + ++ K P NT
Sbjct: 547 FREKHGTIEQVNRITSEIRTAFEHREYCTAIFLDVAQAFDRVWLDGLLFKIIK-LLPQNT 605
Query: 108 RRLLDSYLDCRKVRVRYAGEECTRETNKGC 19
+LL SYL R +R C T++ C
Sbjct: 606 HKLLKSYLYNRVFAIR-----CDTSTSRDC 630
>AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein
protein.
Length = 1092
Score = 85.4 bits (202), Expect = 3e-17
Identities = 57/156 (36%), Positives = 79/156 (50%), Gaps = 4/156 (2%)
Frame = -2
Query: 462 WKEATVVVLRKPGKEDYTSPKSYRPIGLLPVLGKVLERMVVARIKWQ--FVPRLSTRQFG 289
WK A V ++ KPGK PKSYRPI LL L K+ ER+++ R+ F + QFG
Sbjct: 549 WKHAQVKMILKPGKSS-NEPKSYRPISLLSGLSKMFERLLLKRLFRVDLFKKAIPLHQFG 607
Query: 288 FMPQKSTEDALYTLIKHVQDKLRLKKLIVLVSLDIEGAFDSAWWPAIKVRLAKERCPVNT 109
F + TE + + + + + K+ V LDI AFD W + ++LAK P N
Sbjct: 608 FRKEHGTEQQIARVTQFILEAFERKEYCSAVFLDISEAFDRVWHEGLLLKLAK-ILPYNL 666
Query: 108 RRLLDSYLDCRKVRVR-YAGEEC-TRETNKGCVQGS 7
+L+SYL R V+ AGE T + G QGS
Sbjct: 667 YIILESYLTNRTFEVKDQAGETSRTGQIGAGVPQGS 702
>AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p
protein.
Length = 888
Score = 85.4 bits (202), Expect = 3e-17
Identities = 50/150 (33%), Positives = 77/150 (51%), Gaps = 2/150 (1%)
Frame = -2
Query: 462 WKEATVVVLRKPGKEDYTSPKSYRPIGLLPVLGKVLERMVVARIK--WQFVPRLSTRQFG 289
WK++T+V++ KPGK D T P SYRPI LL L K+ E+M++ RI + L T QFG
Sbjct: 488 WKKSTIVMIPKPGK-DKTQPSSYRPISLLTCLSKLFEKMLLLRISPHLRINNTLPTHQFG 546
Query: 288 FMPQKSTEDALYTLIKHVQDKLRLKKLIVLVSLDIEGAFDSAWWPAIKVRLAKERCPVNT 109
F + T + + + ++ ++ + LD+ AFD W + ++ K P NT
Sbjct: 547 FREKHGTIEQVNRITSEIRTAFEHREYCTAIFLDVAQAFDRVWLDGLLFKIIK-LLPQNT 605
Query: 108 RRLLDSYLDCRKVRVRYAGEECTRETNKGC 19
+LL SYL +R C T++ C
Sbjct: 606 HKLLKSYLYNTVFAIR-----CDTSTSRDC 630
>U02279-1|AAA18301.1| 964|Drosophila melanogaster protein (
Drosophila melanogastertelomere-associated transposons
TART, TART-A and HeT-A,and TART-A ORF2 gene, partial
cds. ).
Length = 964
Score = 84.2 bits (199), Expect = 8e-17
Identities = 55/156 (35%), Positives = 78/156 (50%), Gaps = 4/156 (2%)
Frame = -2
Query: 462 WKEATVVVLRKPGKEDYTSPKSYRPIGLLPVLGKVLERMVVARIKWQ--FVPRLSTRQFG 289
WK A V ++ KPGK PKSYRPI LL L K+ ER+++ R+ F + QFG
Sbjct: 421 WKHAQVKMILKPGKS-VNDPKSYRPISLLSGLSKMFERLLLKRLFRVDLFKKAIPLHQFG 479
Query: 288 FMPQKSTEDALYTLIKHVQDKLRLKKLIVLVSLDIEGAFDSAWWPAIKVRLAKERCPVNT 109
F + TE + + + + + K+ V LDI AFD W + ++LAK P N
Sbjct: 480 FRKEHGTEQQIARVTQFILEAFERKEYCSAVFLDISEAFDRVWHEGLLLKLAK-ILPYNL 538
Query: 108 RRLLDSYLDCRKVRVRYAGEECTR--ETNKGCVQGS 7
+L+SYL R V+ E +R + G QGS
Sbjct: 539 YIILESYLTNRTFEVKDQAGETSRAGQIGAGVPQGS 574
>AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 84.2 bits (199), Expect = 8e-17
Identities = 55/156 (35%), Positives = 78/156 (50%), Gaps = 4/156 (2%)
Frame = -2
Query: 462 WKEATVVVLRKPGKEDYTSPKSYRPIGLLPVLGKVLERMVVARIKWQ--FVPRLSTRQFG 289
WK A V ++ KPGK PKSYRPI LL L K+ ER+++ R+ F + QFG
Sbjct: 537 WKHAQVKMILKPGKS-VNDPKSYRPISLLSGLSKMFERLLLKRLFRVDLFKKAIPLHQFG 595
Query: 288 FMPQKSTEDALYTLIKHVQDKLRLKKLIVLVSLDIEGAFDSAWWPAIKVRLAKERCPVNT 109
F + TE + + + + + K+ V LDI AFD W + ++LAK P N
Sbjct: 596 FRKEHGTEQQIARVTQFILEAFERKEYCSAVFLDISEAFDRVWHEGLLLKLAK-ILPYNL 654
Query: 108 RRLLDSYLDCRKVRVRYAGEECTR--ETNKGCVQGS 7
+L+SYL R V+ E +R + G QGS
Sbjct: 655 YIILESYLTNRTFEVKDQAGETSRAGQIGAGVPQGS 690
>AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 84.2 bits (199), Expect = 8e-17
Identities = 55/156 (35%), Positives = 78/156 (50%), Gaps = 4/156 (2%)
Frame = -2
Query: 462 WKEATVVVLRKPGKEDYTSPKSYRPIGLLPVLGKVLERMVVARIKWQ--FVPRLSTRQFG 289
WK A V ++ KPGK PKSYRPI LL L K+ ER+++ R+ F + QFG
Sbjct: 537 WKHAQVKMILKPGKS-VNDPKSYRPISLLSGLSKMFERLLLKRLFRVDLFKKAIPLHQFG 595
Query: 288 FMPQKSTEDALYTLIKHVQDKLRLKKLIVLVSLDIEGAFDSAWWPAIKVRLAKERCPVNT 109
F + TE + + + + + K+ V LDI AFD W + ++LAK P N
Sbjct: 596 FRKEHGTEQQIARVTQFILEAFERKEYCSAVFLDISEAFDRVWHEGLLLKLAK-ILPYNL 654
Query: 108 RRLLDSYLDCRKVRVRYAGEECTR--ETNKGCVQGS 7
+L+SYL R V+ E +R + G QGS
Sbjct: 655 YIILESYLTNRTFEVKDQAGETSRAGQIGAGVPQGS 690
>AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein
protein.
Length = 1042
Score = 84.2 bits (199), Expect = 8e-17
Identities = 55/156 (35%), Positives = 78/156 (50%), Gaps = 4/156 (2%)
Frame = -2
Query: 462 WKEATVVVLRKPGKEDYTSPKSYRPIGLLPVLGKVLERMVVARIKWQ--FVPRLSTRQFG 289
WK A V ++ KPGK PKSYRPI LL L K+ ER+++ R+ F + QFG
Sbjct: 499 WKHAQVKMILKPGKS-VNDPKSYRPISLLSGLSKMFERLLLKRLFRVDLFKKAIPLHQFG 557
Query: 288 FMPQKSTEDALYTLIKHVQDKLRLKKLIVLVSLDIEGAFDSAWWPAIKVRLAKERCPVNT 109
F + TE + + + + + K+ V LDI AFD W + ++LAK P N
Sbjct: 558 FRKEHGTEQQIARVTQFILEAFERKEYCSAVFLDISEAFDRVWHEGLLLKLAK-ILPYNL 616
Query: 108 RRLLDSYLDCRKVRVRYAGEECTR--ETNKGCVQGS 7
+L+SYL R V+ E +R + G QGS
Sbjct: 617 YIILESYLTNRTFEVKDQAGETSRAGQIGAGVPQGS 652
>AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 84.2 bits (199), Expect = 8e-17
Identities = 55/156 (35%), Positives = 78/156 (50%), Gaps = 4/156 (2%)
Frame = -2
Query: 462 WKEATVVVLRKPGKEDYTSPKSYRPIGLLPVLGKVLERMVVARIKWQ--FVPRLSTRQFG 289
WK A V ++ KPGK PKSYRPI LL L K+ ER+++ R+ F + QFG
Sbjct: 537 WKHAQVKMILKPGKS-VNDPKSYRPISLLSGLSKMFERLLLKRLFRVDLFKKAIPLHQFG 595
Query: 288 FMPQKSTEDALYTLIKHVQDKLRLKKLIVLVSLDIEGAFDSAWWPAIKVRLAKERCPVNT 109
F + TE + + + + + K+ V LDI AFD W + ++LAK P N
Sbjct: 596 FRKEHGTEQQIARVTQFILEAFERKEYCSAVFLDISEAFDRVWHEGLLLKLAK-ILPYNL 654
Query: 108 RRLLDSYLDCRKVRVRYAGEECTR--ETNKGCVQGS 7
+L+SYL R V+ E +R + G QGS
Sbjct: 655 YIILESYLTNRTFEVKDQAGETSRAGQIGAGVPQGS 690
>AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p
protein.
Length = 906
Score = 83.8 bits (198), Expect = 1e-16
Identities = 53/156 (33%), Positives = 78/156 (50%), Gaps = 3/156 (1%)
Frame = -2
Query: 462 WKEATVVVLRKPGKEDYTSPKSYRPIGLLPVLGKVLERMVVARIKWQFVPR--LSTRQFG 289
WK A ++++ KPGK + SP+SYRPI LL L K+ ER++ R+ R L QFG
Sbjct: 493 WKMAAILMIHKPGKPE-ESPESYRPISLLSSLSKLWERLIANRLNDIMTERRILPDHQFG 551
Query: 288 FMPQKSTEDALYTLIKHVQDKLRLKKLIVLVSLDIEGAFDSAWWPAIKVRLAKERCPVNT 109
F ST + ++ L KH+ K+ V +D++ AFD W + + K+ P
Sbjct: 552 FRQGHSTVEQVHRLTKHILQAFDDKEYCNAVFIDMQQAFDRVWHDGL-ISKVKKLFPAPY 610
Query: 108 RRLLDSYLDCRKVRVRYAGE-ECTRETNKGCVQGSI 4
+L SYL+ R+ VR R G QGS+
Sbjct: 611 YGVLKSYLEDRRFMVRVRNSYSIPRVMRAGVPQGSV 646
>U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative reverse
transcriptase protein.
Length = 1084
Score = 83.0 bits (196), Expect = 2e-16
Identities = 56/156 (35%), Positives = 80/156 (51%), Gaps = 4/156 (2%)
Frame = -2
Query: 462 WKEATVVVLRKPGKEDYTSPKSYRPIGLLPVLGKVLERMVVARI-KWQ-FVPRLSTRQFG 289
WK A V ++ KPGK P+SYRPI LL L K+ ER+++ R+ K F + QFG
Sbjct: 537 WKHAQVKMILKPGKSA-NEPRSYRPISLLSGLSKIFERLLLKRLFKVDLFKKAIPLHQFG 595
Query: 288 FMPQKSTEDALYTLIKHVQDKLRLKKLIVLVSLDIEGAFDSAWWPAIKVRLAKERCPVNT 109
F + +E + + + + + K+ V LDI AFD W + ++LAK P N
Sbjct: 596 FRKEHGSEQQIARVTQFILEAFERKEYCSAVFLDISEAFDRVWHEGLLLKLAK-ILPYNL 654
Query: 108 RRLLDSYLDCRKVRVR-YAGEEC-TRETNKGCVQGS 7
+L+SYL R V+ AGE T + G QGS
Sbjct: 655 YIILESYLTNRTFEVKDQAGETSRTGQIGAGVPQGS 690
>AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein.
Length = 884
Score = 81.8 bits (193), Expect = 4e-16
Identities = 51/156 (32%), Positives = 85/156 (54%), Gaps = 3/156 (1%)
Frame = -2
Query: 462 WKEATVVVLRKPGKEDYTSPKSYRPIGLLPVLGKVLERMVVAR-IKWQFVPR-LSTRQFG 289
WK A +V + KPGK +P+SYRPI LL L K+LE+++ R +K+ + L T Q+G
Sbjct: 517 WKIAKIVPILKPGKPP-DNPESYRPISLLSGLSKILEKLIKLRLVKFLDIHNTLPTVQYG 575
Query: 288 FMPQKSTEDALYTLIKHVQDKLRLKKLIVLVSLDIEGAFDSAWWPAIKVRLAKERCPVNT 109
F +T L ++++ ++ K+ + LV+LDIE AFD+ W + +L P+
Sbjct: 576 FRNGLNTILPTLKLRNYIKESIQSKQSVGLVTLDIEAAFDTVWHDGLLHKLKMIGTPIYL 635
Query: 108 RRLLDSYLDCRKVRVRY-AGEECTRETNKGCVQGSI 4
+++ ++L R V + + R N G QGS+
Sbjct: 636 IKIVQNFLTHRYFSVNLNSSQSARRILNAGVPQGSV 671
>AY089343-1|AAL90081.2| 718|Drosophila melanogaster AT16518p
protein.
Length = 718
Score = 81.8 bits (193), Expect = 4e-16
Identities = 50/156 (32%), Positives = 79/156 (50%), Gaps = 3/156 (1%)
Frame = -2
Query: 462 WKEATVVVLRKPGKEDYTSPKSYRPIGLLPVLGKVLERMVVARIKW--QFVPRLSTRQFG 289
WK A+++++ K GK T SYRPI LLP LGK++ER+++ R+ + QFG
Sbjct: 296 WKSASIIMIHKTGKTP-TDVDSYRPISLLPSLGKIMERLILNRLLTCKDVTKAIPKFQFG 354
Query: 288 FMPQKSTEDALYTLIKHVQDKLRLKKLIVLVSLDIEGAFDSAWWPAIKVRLAKERCPVNT 109
F Q T + L+ ++ + + K+ V LDI+ AFD W P + + AK P
Sbjct: 355 FRLQHGTPEQLHRVVNFALEAMENKEYAVGAFLDIQQAFDRVWHPGLLYK-AKRLFPPQL 413
Query: 108 RRLLDSYLDCRKVRVRYAG-EECTRETNKGCVQGSI 4
++ S+L+ R V G + + G QGS+
Sbjct: 414 YLVVKSFLEERTFHVSVDGYKSSIKPIAAGVPQGSV 449
>AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse
transcriptase protein.
Length = 832
Score = 81.8 bits (193), Expect = 4e-16
Identities = 51/156 (32%), Positives = 85/156 (54%), Gaps = 3/156 (1%)
Frame = -2
Query: 462 WKEATVVVLRKPGKEDYTSPKSYRPIGLLPVLGKVLERMVVAR-IKWQFVPR-LSTRQFG 289
WK A +V + KPGK +P+SYRPI LL L K+LE+++ R +K+ + L T Q+G
Sbjct: 465 WKIAKIVPILKPGKPP-DNPESYRPISLLSGLSKILEKLIKLRLVKFLDIHNTLPTVQYG 523
Query: 288 FMPQKSTEDALYTLIKHVQDKLRLKKLIVLVSLDIEGAFDSAWWPAIKVRLAKERCPVNT 109
F +T L ++++ ++ K+ + LV+LDIE AFD+ W + +L P+
Sbjct: 524 FRNGLNTILPTLKLRNYIKESIQSKQSVGLVTLDIEAAFDTVWHDGLLHKLKMIGTPIYL 583
Query: 108 RRLLDSYLDCRKVRVRY-AGEECTRETNKGCVQGSI 4
+++ ++L R V + + R N G QGS+
Sbjct: 584 IKIVQNFLTHRYFSVNLNSSQSARRILNAGVPQGSV 619
>M22874-2|AAA28675.1| 916|Drosophila melanogaster protein (
D.melanogaster LINEelement J-1, clone J-1. ).
Length = 916
Score = 79.8 bits (188), Expect = 2e-15
Identities = 49/156 (31%), Positives = 78/156 (50%), Gaps = 3/156 (1%)
Frame = -2
Query: 462 WKEATVVVLRKPGKEDYTSPKSYRPIGLLPVLGKVLERMVVARIKW--QFVPRLSTRQFG 289
WK A+++++ K GK T SYRP LLP LGK++ER+++ R+ + QFG
Sbjct: 494 WKSASIIMIHKTGKTP-TDVDSYRPTSLLPSLGKIMERLILNRLLTCKDVTKAIPKFQFG 552
Query: 288 FMPQKSTEDALYTLIKHVQDKLRLKKLIVLVSLDIEGAFDSAWWPAIKVRLAKERCPVNT 109
F Q T + L+ ++ + + K+ V LDI+ AFD W P + + AK P
Sbjct: 553 FRLQHGTPEQLHRVVNFALEAMENKEYAVGAFLDIQQAFDRVWHPGLLYK-AKRLFPPQL 611
Query: 108 RRLLDSYLDCRKVRVRYAG-EECTRETNKGCVQGSI 4
++ S+L+ R V G + + G QGS+
Sbjct: 612 YLVVKSFLEERTFHVSVDGYKSSIKPIAAGVPQGSV 647
>AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown
protein.
Length = 908
Score = 78.2 bits (184), Expect = 5e-15
Identities = 51/156 (32%), Positives = 77/156 (49%), Gaps = 3/156 (1%)
Frame = -2
Query: 462 WKEATVVVLRKPGKEDYTSPKSYRPIGLLPVLGKVLERMVVARIKWQFVPRLST--RQFG 289
WK + ++ KPGK + P SYRPI LLP + KV ER++ RI + T QFG
Sbjct: 492 WKLGIISMIHKPGKPE-REPASYRPISLLPSISKVFERLIAVRIVSIMEAQGITPEHQFG 550
Query: 288 FMPQKSTEDALYTLIKHVQDKLRLKKLIVLVSLDIEGAFDSAWWPAIKVRLAKERCPVNT 109
F T + L+ +++ + K+ + LDI AFD W +++++ K+ P
Sbjct: 551 FRAGHCTVEQLHRVVEQILTAYDSKEYCNSLFLDIREAFDRVWHIGLQLKI-KQTLPAPY 609
Query: 108 RRLLDSYLDCRKVRVRYAGEECT-RETNKGCVQGSI 4
LL SYL+ R+ VR+ T G QGS+
Sbjct: 610 FGLLKSYLEGRRFAVRFHSAISTEHNVAAGVPQGSV 645
>X51968-2|CAA36227.1| 1021|Drosophila melanogaster protein (
Drosophila melanogasterDNA for type I retrotransposable
element R1Dm. ).
Length = 1021
Score = 77.0 bits (181), Expect = 1e-14
Identities = 54/155 (34%), Positives = 76/155 (49%), Gaps = 2/155 (1%)
Frame = -2
Query: 462 WKEATVVVLRKPGKEDYTSPKSYRPIGLLPVLGKVLERMVVARIKWQFVPRLSTRQFGFM 283
WK VV L K +D P SYR I LLPV GKVLE ++V R++ + +P QFGF
Sbjct: 490 WKCPRVVSLLKGPDKDKCEPSSYRGICLLPVFGKVLEAIMVNRVR-EVLPEGCRWQFGFR 548
Query: 282 PQKSTEDALYTLIKHVQDKL--RLKKLIVLVSLDIEGAFDSAWWPAIKVRLAKERCPVNT 109
+ EDA +HV+ + + ++ +D +GAFD+ W A RLA C
Sbjct: 549 QGRCVEDAW----RHVKSSVGASAAQYVLGTFVDFKGAFDNVEWSAALSRLADLGC--RE 602
Query: 108 RRLLDSYLDCRKVRVRYAGEECTRETNKGCVQGSI 4
L S+ R+ +R + +GC QGSI
Sbjct: 603 MGLWQSFFSGRRAVIRSSSGTVEVPVTRGCPQGSI 637
>AM040243-1|CAJ13339.1| 656|Drosophila melanogaster pol protein
protein.
Length = 656
Score = 75.8 bits (178), Expect = 3e-14
Identities = 53/157 (33%), Positives = 76/157 (48%), Gaps = 4/157 (2%)
Frame = -2
Query: 462 WKEATVVVLRKPGKEDYTSPKSYRPIGLLPVLGKVLERMVVARIKW--QFVPRLSTRQFG 289
WK A++ ++ KPGK + SYRPI LL L K+LER+++ R+ F + + QFG
Sbjct: 93 WKHASISMIPKPGKSPFAL-NSYRPISLLSGLSKLLERILLKRLYDIDSFAKAIPSHQFG 151
Query: 288 FMPQKSTEDALYTLIKHVQDKLRLKKLIVLVSLDIEGAFDSAWWPAIKVRLAKERCPVNT 109
F E L + + + K + LDI AFD W + +L++ P
Sbjct: 152 FRKDHGAEHQLARVTQFILKAFDEKDVCSATFLDITEAFDRVWHDGLLYKLSR-LIPRYL 210
Query: 108 RRLLDSYLDCRKVRVRYAGEECTRETN--KGCVQGSI 4
LL++YL R VR GE +R N G QGSI
Sbjct: 211 FDLLENYLSNRTFSVRIDGETTSRIGNIRAGVPQGSI 247
>AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 75.8 bits (178), Expect = 3e-14
Identities = 53/157 (33%), Positives = 76/157 (48%), Gaps = 4/157 (2%)
Frame = -2
Query: 462 WKEATVVVLRKPGKEDYTSPKSYRPIGLLPVLGKVLERMVVARIKW--QFVPRLSTRQFG 289
WK A++ ++ KPGK + SYRPI LL L K+LER+++ R+ F + + QFG
Sbjct: 540 WKHASISMIPKPGKSPFAL-NSYRPISLLSGLSKLLERILLKRLYDIDSFAKAIPSHQFG 598
Query: 288 FMPQKSTEDALYTLIKHVQDKLRLKKLIVLVSLDIEGAFDSAWWPAIKVRLAKERCPVNT 109
F E L + + + K + LDI AFD W + +L++ P
Sbjct: 599 FRKDHGAEHQLARVTQFILKAFDEKDVCSATFLDITEAFDRVWHDGLLYKLSR-LIPRYL 657
Query: 108 RRLLDSYLDCRKVRVRYAGEECTRETN--KGCVQGSI 4
LL++YL R VR GE +R N G QGSI
Sbjct: 658 FDLLENYLSNRTFSVRIDGETTSRIGNIRAGVPQGSI 694
>AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 75.8 bits (178), Expect = 3e-14
Identities = 53/157 (33%), Positives = 76/157 (48%), Gaps = 4/157 (2%)
Frame = -2
Query: 462 WKEATVVVLRKPGKEDYTSPKSYRPIGLLPVLGKVLERMVVARIKW--QFVPRLSTRQFG 289
WK A++ ++ KPGK + SYRPI LL L K+LER+++ R+ F + + QFG
Sbjct: 540 WKHASISMIPKPGKSPFAL-NSYRPISLLSGLSKLLERILLKRLYDIDSFAKAIPSHQFG 598
Query: 288 FMPQKSTEDALYTLIKHVQDKLRLKKLIVLVSLDIEGAFDSAWWPAIKVRLAKERCPVNT 109
F E L + + + K + LDI AFD W + +L++ P
Sbjct: 599 FRKDHGAEHQLARVTQFILKAFDEKDVCSATFLDITEAFDRVWHDGLLYKLSR-LIPRYL 657
Query: 108 RRLLDSYLDCRKVRVRYAGEECTRETN--KGCVQGSI 4
LL++YL R VR GE +R N G QGSI
Sbjct: 658 FDLLENYLSNRTFSVRIDGETTSRIGNIRAGVPQGSI 694
>M17214-2|AAA28508.1| 858|Drosophila melanogaster protein (
D.melanogaster Fw repetitiveelement putative reverse
transcriptase, complete cds,and putative binding
protein, 3' end. ).
Length = 858
Score = 75.4 bits (177), Expect = 4e-14
Identities = 47/156 (30%), Positives = 75/156 (48%), Gaps = 3/156 (1%)
Frame = -2
Query: 462 WKEATVVVLRKPGKEDYTSPKSYRPIGLLPVLGKVLERMVVARIKWQ--FVPRLSTRQFG 289
WK ++++ KPGK ++T SYRPI LL + K+ E+ ++ R+ + + QFG
Sbjct: 490 WKMMKIIMIPKPGK-NHTVASSYRPISLLSCISKLFEKCLLIRLNQHQTYHNIIPAHQFG 548
Query: 288 FMPQKSTEDALYTLIKHVQDKLRLKKLIVLVSLDIEGAFDSAWWPAIKVRLAKERCPVNT 109
F T + + + ++ ++ V LD+ AFD W + ++ K P +T
Sbjct: 549 FRESHGTIEQVNRITTEIRTAFEYREYCTAVFLDVSQAFDKVWLDGLMFKI-KISLPEST 607
Query: 108 RRLLDSYLDCRKVRVRYAGEECTRET-NKGCVQGSI 4
+LL SYL RK VR T T G QGS+
Sbjct: 608 HKLLKSYLYDRKFAVRCNTATSTVHTIEAGVPQGSV 643
>AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 74.5 bits (175), Expect = 6e-14
Identities = 53/157 (33%), Positives = 75/157 (47%), Gaps = 4/157 (2%)
Frame = -2
Query: 462 WKEATVVVLRKPGKEDYTSPKSYRPIGLLPVLGKVLERMVVARIKW--QFVPRLSTRQFG 289
WK A++ ++ KPGK + SYRPI LL L K+LER++ R+ F + + QFG
Sbjct: 540 WKHASISMIPKPGKSPFAL-NSYRPISLLSGLSKLLERILPKRLYDIDSFAKAIPSHQFG 598
Query: 288 FMPQKSTEDALYTLIKHVQDKLRLKKLIVLVSLDIEGAFDSAWWPAIKVRLAKERCPVNT 109
F E L + + + K + LDI AFD W + +L++ P
Sbjct: 599 FRKDHGAEHQLARVTQFILKAFDEKDVCSATFLDITEAFDRVWHDGLLYKLSR-LIPRYL 657
Query: 108 RRLLDSYLDCRKVRVRYAGEECTRETN--KGCVQGSI 4
LL++YL R VR GE +R N G QGSI
Sbjct: 658 FDLLENYLSNRTFSVRIDGETTSRIGNIRAGVPQGSI 694
>AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein.
Length = 1227
Score = 71.3 bits (167), Expect = 6e-13
Identities = 44/137 (32%), Positives = 67/137 (48%), Gaps = 3/137 (2%)
Frame = -2
Query: 462 WKEATVVVLRKPGKEDYTSPKSYRPIGLLPVLGKVLERMVVARIKWQFVPR---LSTRQF 292
W+ A ++ + KP K + SYRPI LL LGK LE+++ R+ W F+ R +S Q
Sbjct: 492 WRSAIIIPISKPNKPP-SDINSYRPISLLSCLGKTLEKIIAQRLTW-FIKRHNLISHNQV 549
Query: 291 GFMPQKSTEDALYTLIKHVQDKLRLKKLIVLVSLDIEGAFDSAWWPAIKVRLAKERCPVN 112
F ST DAL + + L K + +++ D E AFD A+ RL +
Sbjct: 550 AFKSNHSTMDALLRIQHFASNALSTKNHVSILATDFERAFDRVGIHAVLCRLERWGIGPR 609
Query: 111 TRRLLDSYLDCRKVRVR 61
L+ +++ R RVR
Sbjct: 610 LYNLIKAFMTNRSFRVR 626
>AJ278684-2|CAB99192.1| 989|Drosophila melanogaster
endonuclease/reverse transcriptase protein.
Length = 989
Score = 71.3 bits (167), Expect = 6e-13
Identities = 50/162 (30%), Positives = 83/162 (51%), Gaps = 9/162 (5%)
Frame = -2
Query: 462 WKEATVVVLRKPGKEDYTSPKSYRPIGLLPVLGKVLERMVVARIK--WQFVPRLSTRQFG 289
WK+ +V+L K GK P+SYRP+ LL ++GK+ ER++ ARI+ + L +Q+G
Sbjct: 458 WKKMKLVLLLK-GKGPANVPRSYRPLCLLDIVGKLFERILYARIELITESPTGLQGQQYG 516
Query: 288 FMPQKSTEDALYTLIKHVQDKL-------RLKKLIVLVSLDIEGAFDSAWWPAIKVRLAK 130
F KST DAL ++ + L KK +++LD++ AF++A WP I +
Sbjct: 517 FRKGKSTLDALKSVTDAARKALDGNRWLGGSKKYCAIITLDVKNAFNTARWPIILGAMRN 576
Query: 129 ERCPVNTRRLLDSYLDCRKVRVRYAGEECTRETNKGCVQGSI 4
P R ++ +Y R + + + + G QGS+
Sbjct: 577 LGVPDYIRGVIGNYFRDRVLWYVTEDGPRSHQVSAGVPQGSV 618
>AY060323-1|AAL25362.1| 241|Drosophila melanogaster GH20809p
protein.
Length = 241
Score = 67.3 bits (157), Expect = 1e-11
Identities = 46/156 (29%), Positives = 75/156 (48%), Gaps = 3/156 (1%)
Frame = -2
Query: 462 WKEATVVVLRKPGKEDYTSPKSYRPIGLLPVLGKVLERMVVARIKWQFVPR--LSTRQFG 289
WK++ ++++ KP K D T P SYRPI LL L K+ E+ ++ RI L + QF
Sbjct: 30 WKKSIIIMIPKPEK-DKTQP-SYRPISLLTCLSKLFEKGLLLRISPHLKTHNTLPSYQFD 87
Query: 288 FMPQKSTEDALYTLIKHVQDKLRLKKLIVLVSLDIEGAFDSAWWPAIKVRLAKERCPVNT 109
F + + + + ++ ++ + LD+ AFD W + ++ + P N
Sbjct: 88 FPAKHGAIEQVNRITTEIRTAFEHREYCTALFLDVAQAFDRVWLDGLMFKII-QLLPQNI 146
Query: 108 RRLLDSYLDCRKVRVRYAGEECTRET-NKGCVQGSI 4
+LL SYLD R VR + + T G QGS+
Sbjct: 147 HKLLKSYLDKRVFAVRCSSSTSSDFTIEAGVPQGSV 182
>M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2
protein.
Length = 1219
Score = 56.8 bits (131), Expect = 1e-08
Identities = 38/136 (27%), Positives = 70/136 (51%), Gaps = 2/136 (1%)
Frame = -2
Query: 462 WKEATVVVLRKPGKEDYTSPKSYRPIGLLPVLGKVLERMVVARIKW--QFVPRLSTRQFG 289
+K + ++ + KP D T SYRPI L + K+L++++ R+ W + ++ +QFG
Sbjct: 487 YKTSLIIPILKPNT-DKTKTSSYRPISLNCCIAKILDKIIAKRLWWLVTYNNLINDKQFG 545
Query: 288 FMPQKSTEDALYTLIKHVQDKLRLKKLIVLVSLDIEGAFDSAWWPAIKVRLAKERCPVNT 109
F KST D L + ++ K ++ LV+LD AFD +I +L + +
Sbjct: 546 FKKGKSTSDCL-LYVDYLITKSKMH--TSLVTLDFSRAFDRVGVHSIIQQLQEWKTGPKI 602
Query: 108 RRLLDSYLDCRKVRVR 61
+ + +++ RK+ VR
Sbjct: 603 IKYIKNFMSNRKITVR 618
>BT030416-1|ABO52836.1| 831|Drosophila melanogaster IP17195p
protein.
Length = 831
Score = 31.9 bits (69), Expect = 0.44
Identities = 20/64 (31%), Positives = 29/64 (45%)
Frame = -2
Query: 279 QKSTEDALYTLIKHVQDKLRLKKLIVLVSLDIEGAFDSAWWPAIKVRLAKERCPVNTRRL 100
QK A+Y D+L KK +L L+ + WW +R + CP N R+
Sbjct: 78 QKLYAKAIYDNYADTSDELPFKKGDILTVLEQDTEGFQGWW-LCSLRNRQGLCPGNRLRV 136
Query: 99 LDSY 88
L+SY
Sbjct: 137 LNSY 140
>EF599121-1|ABQ96885.1| 793|Drosophila melanogaster Crk-associated
substrate protein.
Length = 793
Score = 30.3 bits (65), Expect = 1.3
Identities = 18/58 (31%), Positives = 27/58 (46%)
Frame = -2
Query: 261 ALYTLIKHVQDKLRLKKLIVLVSLDIEGAFDSAWWPAIKVRLAKERCPVNTRRLLDSY 88
A+Y D+L KK +L L+ + WW +R + CP N R+L+SY
Sbjct: 46 AIYDNYADTSDELPFKKGDILTVLEQDTEGFQGWW-LCSLRNRQGLCPGNRLRVLNSY 102
>AE014296-17|AAF47335.2| 793|Drosophila melanogaster CG1212-PA,
isoform A protein.
Length = 793
Score = 30.3 bits (65), Expect = 1.3
Identities = 18/58 (31%), Positives = 27/58 (46%)
Frame = -2
Query: 261 ALYTLIKHVQDKLRLKKLIVLVSLDIEGAFDSAWWPAIKVRLAKERCPVNTRRLLDSY 88
A+Y D+L KK +L L+ + WW +R + CP N R+L+SY
Sbjct: 46 AIYDNYADTSDELPFKKGDILTVLEQDTEGFQGWW-LCSLRNRQGLCPGNRLRVLNSY 102
>AE014296-988|AAN12103.1| 460|Drosophila melanogaster CG32414-PA
protein.
Length = 460
Score = 29.9 bits (64), Expect = 1.8
Identities = 22/96 (22%), Positives = 40/96 (41%), Gaps = 1/96 (1%)
Frame = -1
Query: 463 LERGNGGGSPKTRQGRLHEPQVVSTDRTFAGLGEGPGEDGSSKDQMAICAAA*YSPVWLY 284
LER S T H VS DR + GP S+++ + + Y P+ +
Sbjct: 336 LERSTSRDSTTTSSSYGHRAYGVSPDRNYVVFSSGPLRSQSAENTFS--SQPIYDPLPRH 393
Query: 283 APEEHRGRPLYSNKTRTRQVEAEEAN-CPGVVGYRG 179
P+ P++ + + +Q + + + P + GY G
Sbjct: 394 PPQPLHQPPMHHQQQQQQQQQQQYMSYAPEMGGYTG 429
>AE014298-1985|AAS65328.1| 171|Drosophila melanogaster CG33246-PA
protein.
Length = 171
Score = 29.5 bits (63), Expect = 2.3
Identities = 17/56 (30%), Positives = 27/56 (48%)
Frame = -2
Query: 390 PIGLLPVLGKVLERMVVARIKWQFVPRLSTRQFGFMPQKSTEDALYTLIKHVQDKL 223
P+GL V GK ++ R K F P+ T+ G M S D ++L+ ++ L
Sbjct: 112 PVGLSAVWGKSTVKIHCPRCKSNFYPKSDTQLDGAMFGPSFPDIFFSLLPNLTSPL 167
>AE014297-241|AAG22215.2| 1674|Drosophila melanogaster CG2666-PB,
isoform B protein.
Length = 1674
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = -2
Query: 420 EDYTSPKSYRPIGLLPVLGKVLERMVVAR 334
E+Y SP+S P+GL+ LG++ E M R
Sbjct: 285 ENYVSPQS--PLGLVRALGRIKEEMKYTR 311
>AE014297-240|AAS65101.1| 1615|Drosophila melanogaster CG2666-PC,
isoform C protein.
Length = 1615
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = -2
Query: 420 EDYTSPKSYRPIGLLPVLGKVLERMVVAR 334
E+Y SP+S P+GL+ LG++ E M R
Sbjct: 285 ENYVSPQS--PLGLVRALGRIKEEMKYTR 311
>AE014297-239|AAN13280.1| 1615|Drosophila melanogaster CG2666-PA,
isoform A protein.
Length = 1615
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = -2
Query: 420 EDYTSPKSYRPIGLLPVLGKVLERMVVAR 334
E+Y SP+S P+GL+ LG++ E M R
Sbjct: 285 ENYVSPQS--PLGLVRALGRIKEEMKYTR 311
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,408,905
Number of Sequences: 53049
Number of extensions: 474622
Number of successful extensions: 1419
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 1350
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1372
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1559812275
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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