Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-4453
(466 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical ... 60 1e-09
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans... 49 1e-06
AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical ... 49 1e-06
U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical pr... 48 3e-06
Z75531-2|CAA99804.2| 278|Caenorhabditis elegans Hypothetical pr... 28 2.9
AY728063-1|AAU43724.1| 278|Caenorhabditis elegans cadmium-induc... 28 2.9
U41032-4|AAO44918.2| 1130|Caenorhabditis elegans Protein kinase ... 27 6.6
U41032-3|AAO44917.1| 1237|Caenorhabditis elegans Protein kinase ... 27 6.6
M73827-1|AAA27983.1| 234|Caenorhabditis elegans casein kinase I... 27 6.6
AF003386-6|AAK82897.1| 527|Caenorhabditis elegans Hypothetical ... 27 6.6
AF003386-5|AAK82898.1| 529|Caenorhabditis elegans Hypothetical ... 27 6.6
AF003386-2|AAB54255.1| 527|Caenorhabditis elegans Hypothetical ... 27 6.6
AF003386-1|AAK82899.1| 529|Caenorhabditis elegans Hypothetical ... 27 6.6
U41104-5|AAK18976.3| 1564|Caenorhabditis elegans Twik family of ... 27 8.8
>AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical
protein R11E3.3 protein.
Length = 931
Score = 59.7 bits (138), Expect = 1e-09
Identities = 35/101 (34%), Positives = 54/101 (53%), Gaps = 3/101 (2%)
Frame = -2
Query: 462 WKEATVVVLRKPGKEDYTSPKSYRPIGLLPVLGKVLERMVVARIKWQFVPRLSTRQFGFM 283
WK+A V+++ KP K+D SYRPI LL + K+LE+ ++ RIK Q GF
Sbjct: 384 WKKANVIMIPKP-KKDPAIASSYRPISLLSPIAKLLEKAILKRIKNSI--ESPAHQHGFK 440
Query: 282 PQKSTEDALYTLIKHVQDKLRLK---KLIVLVSLDIEGAFD 169
P+ ST A+ + + L +K + ++ LD+ AFD
Sbjct: 441 PEHSTTTAVIQVTNDIIGGLNMKNPPERAIMACLDLRAAFD 481
>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
transcriptase protein.
Length = 1066
Score = 49.2 bits (112), Expect = 1e-06
Identities = 33/105 (31%), Positives = 54/105 (51%)
Frame = -2
Query: 462 WKEATVVVLRKPGKEDYTSPKSYRPIGLLPVLGKVLERMVVARIKWQFVPRLSTRQFGFM 283
WK + ++ K G D + ++YRPI LLPVL KV + ++ R++ Q GF
Sbjct: 603 WKTSKTTLIFKKG--DRENLENYRPICLLPVLYKVFTKCLLNRMRRSLDEAQPVEQAGFR 660
Query: 282 PQKSTEDALYTLIKHVQDKLRLKKLIVLVSLDIEGAFDSAWWPAI 148
ST D +++L + ++ + + LV +D + AFDS AI
Sbjct: 661 RSFSTIDHIHSLQRLLEVGREYQIPLTLVFIDFKKAFDSVEHQAI 705
>AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical
protein K10F12.5 protein.
Length = 805
Score = 49.2 bits (112), Expect = 1e-06
Identities = 33/105 (31%), Positives = 54/105 (51%)
Frame = -2
Query: 462 WKEATVVVLRKPGKEDYTSPKSYRPIGLLPVLGKVLERMVVARIKWQFVPRLSTRQFGFM 283
WK + ++ K G D + ++YRPI LLPVL KV + ++ R++ Q GF
Sbjct: 342 WKTSKTTLIFKKG--DRENLENYRPICLLPVLYKVFTKCLLNRMRRSLDEAQPVEQAGFR 399
Query: 282 PQKSTEDALYTLIKHVQDKLRLKKLIVLVSLDIEGAFDSAWWPAI 148
ST D +++L + ++ + + LV +D + AFDS AI
Sbjct: 400 RSFSTIDHIHSLQRLLEVGREYQIPLTLVFIDFKKAFDSVEHQAI 444
>U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical
protein F20B4.7 protein.
Length = 891
Score = 48.0 bits (109), Expect = 3e-06
Identities = 32/105 (30%), Positives = 54/105 (51%)
Frame = -2
Query: 462 WKEATVVVLRKPGKEDYTSPKSYRPIGLLPVLGKVLERMVVARIKWQFVPRLSTRQFGFM 283
WK + ++ K G D + ++YRPI LLPVL KV + ++ R++ Q GF
Sbjct: 432 WKTSKTTLIFKKG--DRENLENYRPICLLPVLYKVFTKCLLNRMRRSLDEAQPVEQAGFR 489
Query: 282 PQKSTEDALYTLIKHVQDKLRLKKLIVLVSLDIEGAFDSAWWPAI 148
ST D +++L + ++ + + LV +D + AFD+ AI
Sbjct: 490 RSFSTIDHIHSLQRLLEVGREYQIPLTLVFIDFKKAFDTVEHQAI 534
>Z75531-2|CAA99804.2| 278|Caenorhabditis elegans Hypothetical
protein C54D10.2 protein.
Length = 278
Score = 28.3 bits (60), Expect = 2.9
Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Frame = -2
Query: 363 KVLERMVVARIKWQFVPRL---STRQFGFMPQKSTEDALYTLIKHVQDKLRLKKLIVLVS 193
K+L+ + + IK FV + STR G Q +D L+ ++ +QD L +K L
Sbjct: 167 KILQPICLPFIKAAFVKKAYERSTRAIGDFEQTDLDDILHRDLQTIQDYLGEQKF--LFG 224
Query: 192 LDIEGAFDSAWWPAIKVRLAKERCPVN 112
+++ A D+A + + + RC +N
Sbjct: 225 DEVKAA-DAAVFGQLATVIYPFRCKIN 250
>AY728063-1|AAU43724.1| 278|Caenorhabditis elegans
cadmium-inducible lysosomal proteinCDR-3 protein.
Length = 278
Score = 28.3 bits (60), Expect = 2.9
Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Frame = -2
Query: 363 KVLERMVVARIKWQFVPRL---STRQFGFMPQKSTEDALYTLIKHVQDKLRLKKLIVLVS 193
K+L+ + + IK FV + STR G Q +D L+ ++ +QD L +K L
Sbjct: 167 KILQPICLPFIKAAFVKKAYERSTRAIGDFEQTDLDDILHRDLQTIQDYLGEQKF--LFG 224
Query: 192 LDIEGAFDSAWWPAIKVRLAKERCPVN 112
+++ A D+A + + + RC +N
Sbjct: 225 DEVKAA-DAAVFGQLATVIYPFRCKIN 250
>U41032-4|AAO44918.2| 1130|Caenorhabditis elegans Protein kinase
protein 25, isoformb protein.
Length = 1130
Score = 27.1 bits (57), Expect = 6.6
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +3
Query: 369 RPAKVLSVDTTWGSCNLPCLVFGEPPPLP 455
RP V++V N+PCLV PP P
Sbjct: 609 RPFSVVNVPIVQQPANIPCLVPTPAPPAP 637
>U41032-3|AAO44917.1| 1237|Caenorhabditis elegans Protein kinase
protein 25, isoforma protein.
Length = 1237
Score = 27.1 bits (57), Expect = 6.6
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +3
Query: 369 RPAKVLSVDTTWGSCNLPCLVFGEPPPLP 455
RP V++V N+PCLV PP P
Sbjct: 716 RPFSVVNVPIVQQPANIPCLVPTPAPPAP 744
>M73827-1|AAA27983.1| 234|Caenorhabditis elegans casein kinase II
beta subunit protein.
Length = 234
Score = 27.1 bits (57), Expect = 6.6
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = -2
Query: 414 YTSPKSYRPIGLLPVLGKVLERMVVARIKWQFVPRLSTRQ 295
Y + PIGL V G+ + ++ R FVPR S Q
Sbjct: 112 YCENQPMLPIGLSDVPGEAMVKLYCPRCNMVFVPRSSRHQ 151
>AF003386-6|AAK82897.1| 527|Caenorhabditis elegans Hypothetical
protein F59E12.4a protein.
Length = 527
Score = 27.1 bits (57), Expect = 6.6
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +1
Query: 148 DCWPPCAVEGSLYIQRHQDN*LLQPQ 225
DCW + EG+++ RH+D+ L +
Sbjct: 217 DCWTANSAEGTVHYTRHKDSFFLSAE 242
>AF003386-5|AAK82898.1| 529|Caenorhabditis elegans Hypothetical
protein F59E12.4b protein.
Length = 529
Score = 27.1 bits (57), Expect = 6.6
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +1
Query: 148 DCWPPCAVEGSLYIQRHQDN*LLQPQ 225
DCW + EG+++ RH+D+ L +
Sbjct: 217 DCWTANSAEGTVHYTRHKDSFFLSAE 242
>AF003386-2|AAB54255.1| 527|Caenorhabditis elegans Hypothetical
protein F59E12.5a protein.
Length = 527
Score = 27.1 bits (57), Expect = 6.6
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +1
Query: 148 DCWPPCAVEGSLYIQRHQDN*LLQPQ 225
DCW + EG+++ RH+D+ L +
Sbjct: 217 DCWTANSAEGTVHYTRHKDSFFLSAE 242
>AF003386-1|AAK82899.1| 529|Caenorhabditis elegans Hypothetical
protein F59E12.5b protein.
Length = 529
Score = 27.1 bits (57), Expect = 6.6
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +1
Query: 148 DCWPPCAVEGSLYIQRHQDN*LLQPQ 225
DCW + EG+++ RH+D+ L +
Sbjct: 217 DCWTANSAEGTVHYTRHKDSFFLSAE 242
>U41104-5|AAK18976.3| 1564|Caenorhabditis elegans Twik family of
potassium channelsprotein 2 protein.
Length = 1564
Score = 26.6 bits (56), Expect = 8.8
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +2
Query: 158 HHALSKAPSISNDTRTISFFSLNLSCTCFIRV 253
HH +K P ++N + I F+S +CT F R+
Sbjct: 1059 HHDANKVP-LNNVYKVIRFYSFWKTCTSFHRI 1089
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,057,329
Number of Sequences: 27780
Number of extensions: 228243
Number of successful extensions: 603
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 829055604
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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