Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4451
         (730 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0063 - 20619616-20619999,20620514-20620576,20620776-20620778     30   1.6  
11_06_0099 + 20070925-20073867                                         29   2.9  
04_04_0450 - 25320310-25321224,25321317-25321751                       29   3.8  
05_04_0445 - 21316412-21317162,21317253-21317385,21317634-213177...    28   8.7  
03_03_0066 + 14214512-14215146,14215848-14216139,14216264-14216281     28   8.7  

>09_06_0063 - 20619616-20619999,20620514-20620576,20620776-20620778
          Length = 149

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -3

Query: 398 LTSHIDTTIGTMIVELKCHMVVVSWARSNY 309
           LTS +DT  GT +  L C ++  S + SNY
Sbjct: 41  LTSFLDTDTGTTVGRLSCLLITASQSVSNY 70


>11_06_0099 + 20070925-20073867
          Length = 980

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 17/56 (30%), Positives = 31/56 (55%)
 Frame = +2

Query: 395 LAKGFDRNLKKVFVINLSLKGSM*KAVILDTPRILRLITIVEIKVAQLKKPLPINI 562
           ++ G   N++ + +  L LK +    +I   PR+ R +TI+++    L  PLP+NI
Sbjct: 524 ISGGLPTNMENMSLEKLYLKSNQIAGLI---PRMPRNLTILDLSNNSLSGPLPLNI 576


>04_04_0450 - 25320310-25321224,25321317-25321751
          Length = 449

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +2

Query: 323 PTRLLP-CGILIQLSLFRWLCRCGLLAKGFDRNLKKVFVIN 442
           P RL P C   + LS F W CR   L       ++ +FV+N
Sbjct: 250 PARLGPRCSRFLLLSAFTWRCRTAALGYAPGDEVRFMFVVN 290


>05_04_0445 -
           21316412-21317162,21317253-21317385,21317634-21317721,
           21317873-21318238
          Length = 445

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 7/72 (9%)
 Frame = -2

Query: 528 TFISTIVISLRIRGVSRITAFYIEPLRDKFITKTFLRFRSKPFAN-----KPHRHNHRNN 364
           T  +  VIS+    +SR ++ YI  LR  F+   F+ + ++P  N        R + R N
Sbjct: 170 TTCTEYVISMDADNISRSSSTYIGKLRSNFLGTKFIIYDTQPSYNGAVIPPVGRSSRRFN 229

Query: 363 DS*I--KMPHGS 334
              +  KMP GS
Sbjct: 230 SKKVSPKMPSGS 241


>03_03_0066 + 14214512-14215146,14215848-14216139,14216264-14216281
          Length = 314

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 14/40 (35%), Positives = 25/40 (62%)
 Frame = -2

Query: 603 KGFFSKSYQALILNILIGRGFFNWATFISTIVISLRIRGV 484
           +G  S SY+ +I+++L G G FN + F+  +   L ++GV
Sbjct: 206 QGDESNSYKDMIVSLLTGAGLFNISDFVPALA-WLDLQGV 244


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,755,347
Number of Sequences: 37544
Number of extensions: 341578
Number of successful extensions: 579
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 579
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)