Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4448
         (650 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014298-906|AAO41633.1|  333|Drosophila melanogaster CG3960-PD,...    45   1e-04
BT029983-1|ABM92857.1|  419|Drosophila melanogaster IP18653p pro...    41   0.002
AJ010298-1|CAA09069.1| 1571|Drosophila melanogaster polyprotein ...    36   0.048
AE014298-907|AAN09174.2|  231|Drosophila melanogaster CG3960-PF,...    28   9.6  

>AE014298-906|AAO41633.1|  333|Drosophila melanogaster CG3960-PD,
           isoform D protein.
          Length = 333

 Score = 44.8 bits (101), Expect = 1e-04
 Identities = 22/61 (36%), Positives = 37/61 (60%), Gaps = 3/61 (4%)
 Frame = +2

Query: 203 NSGGKVTSTR---TVEEFDVDQCWDERVLRKLLDECSDYEQXXXXXXXXXTLMAEQESMH 373
           N+  KV+S+    T    D+++ WDE+VL++LL++ S YE+          LMAE+E+ H
Sbjct: 72  NTTNKVSSSSAPVTRTTCDIEEIWDEQVLKQLLEQASTYEERRKIRARLRELMAEREAQH 131

Query: 374 E 376
           +
Sbjct: 132 K 132



 Score = 28.3 bits (60), Expect = 9.6
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = +3

Query: 555 APKTVSPFAKFRQLEKQ 605
           A K +SP AKF+QL+KQ
Sbjct: 169 ASKNISPLAKFKQLDKQ 185


>BT029983-1|ABM92857.1|  419|Drosophila melanogaster IP18653p
           protein.
          Length = 419

 Score = 40.7 bits (91), Expect = 0.002
 Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
 Frame = +2

Query: 203 NSGGKVTSTR---TVEEFDVDQCWDERVLRKLLDECSDYEQXXXXXXXXXTLMAEQE 364
           N+  KV+S+    T    D+++ WDE+VL++LL++ S YE+          LMAE+E
Sbjct: 42  NTTNKVSSSSAPVTRTTCDIEEIWDEQVLKQLLEQASTYEERRKIRARLRELMAERE 98



 Score = 28.3 bits (60), Expect = 9.6
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = +3

Query: 555 APKTVSPFAKFRQLEKQ 605
           A K +SP AKF+QL+KQ
Sbjct: 255 ASKNISPLAKFKQLDKQ 271


>AJ010298-1|CAA09069.1| 1571|Drosophila melanogaster polyprotein
           protein.
          Length = 1571

 Score = 35.9 bits (79), Expect = 0.048
 Identities = 16/44 (36%), Positives = 26/44 (59%)
 Frame = -1

Query: 491 LFRRVPPYARCHRNFFFFARFGALPRRLARCLQRFCHRARACFL 360
           LF++  P+  C  NF +  +F +  +R +RC + FCH +RA  L
Sbjct: 453 LFQQFKPFKSCKPNFRYSGQFRS--KRASRCSKLFCHGSRAILL 494


>AE014298-907|AAN09174.2|  231|Drosophila melanogaster CG3960-PF,
           isoform F protein.
          Length = 231

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = +3

Query: 555 APKTVSPFAKFRQLEKQ 605
           A K +SP AKF+QL+KQ
Sbjct: 67  ASKNISPLAKFKQLDKQ 83


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,822,440
Number of Sequences: 53049
Number of extensions: 352433
Number of successful extensions: 979
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 945
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 979
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2765538900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)