Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4448
         (650 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    22   5.9  
AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex det...    22   5.9  
AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex det...    22   5.9  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    22   5.9  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    22   5.9  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    22   5.9  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    22   5.9  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   7.8  

>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 96  NILLWFNRVKERDPGL*VNL 155
           N+L   N++KE D  L VN+
Sbjct: 181 NVLTKINKIKEHDTVLVVNI 200


>AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 96  NILLWFNRVKERDPGL*VNL 155
           N+L   N++KE D  L VN+
Sbjct: 181 NVLTKINKIKEHDTVLVVNI 200


>AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 96  NILLWFNRVKERDPGL*VNL 155
           N+L   N++KE D  L VN+
Sbjct: 181 NVLTKINKIKEHDTVLVVNI 200


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 96  NILLWFNRVKERDPGL*VNL 155
           N+L   N++KE D  L VN+
Sbjct: 170 NVLTKINKIKEHDTVLVVNI 189


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 96  NILLWFNRVKERDPGL*VNL 155
           N+L   N++KE D  L VN+
Sbjct: 186 NVLTKINKIKEHDTVLVVNI 205


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 96  NILLWFNRVKERDPGL*VNL 155
           N+L   N++KE D  L VN+
Sbjct: 181 NVLTKINKIKEHDTVLVVNI 200


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 96  NILLWFNRVKERDPGL*VNL 155
           N+L   N++KE D  L VN+
Sbjct: 181 NVLTKINKIKEHDTVLVVNI 200


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -3

Query: 90  NFES*PYYHRYGFS 49
           +F+  P+ +RYGFS
Sbjct: 217 SFQGPPFTYRYGFS 230


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,792
Number of Sequences: 438
Number of extensions: 2026
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)