Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4447
         (718 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces pombe...    28   1.2  
SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease ...    28   1.5  
SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    28   1.5  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    28   1.5  
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    27   2.7  
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc...    27   2.7  
SPCPB16A4.06c |||sequence orphan|Schizosaccharomyces pombe|chr 3...    27   2.7  
SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|...    27   3.5  
SPAC17G8.11c |||mannosyltransferase complex subunit |Schizosacch...    25   8.2  
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    25   8.2  
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S...    25   8.2  
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c...    25   8.2  

>SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 520

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = +1

Query: 493 SPEEEERANRRQEKTRSYALRRSSHEDRVNAILKPSLFSSNQSQHPFRDS 642
           SP E++  N +Q  + S     S H D VN  ++P L  SN+++   R +
Sbjct: 179 SPIEKD-VNPQQNISDSSIKNNSIHSDEVNPEVRPDLTPSNENEESKRSA 227


>SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 560

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +1

Query: 601 LFSSNQSQHPFRDSHCGNTRGGARYPIRPIVSRFTIH 711
           +F + QS    R  HCG+ R    + + P++   TIH
Sbjct: 285 VFETLQSNQTRRVLHCGDFRASKDHVMHPVLREKTIH 321


>SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 433

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = +1

Query: 481 RVKTSPEEEERANRRQEKTRSYALRRSSHEDRVN-AILKPSLFSSNQSQHPFRDS 642
           R +   EE ERA+RR++  R   LRR    D  N  ++ P+ F      HP  D+
Sbjct: 103 RKRFEDEERERAHRREKAARK-LLRRILVSDSPNMQLVVPNNFQQMFIHHPVVDT 156


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +3

Query: 300 PNITTPSLLHSVLQRTTPASISGELYARAKGF 395
           P++TT S L   L   TPAS  G  ++   GF
Sbjct: 179 PSLTTKSNLSGNLNMVTPASTQGPAFSSKHGF 210


>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 636

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 621 PAPVPRQPLRQYSRGGPVPNSPYSESFYNSL 713
           P  +P  P+ +YS    +P SP +E  YN++
Sbjct: 212 PTAIP-PPIEEYSPSVSLPTSPVAEESYNNV 241


>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 776

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
 Frame = +1

Query: 463 FETASRRVKTSPEEE-ERANRRQEKTRSYALRRSSH-EDRVNAILKPSLFSSNQSQHPFR 636
           FET+    +TSPEE+ E  N  +      +L+ + + E   N +L  S F+     H   
Sbjct: 639 FETSPTVFQTSPEEDKENVNNIKISQPRNSLQTNGYIEGMANNVLDAS-FNVEDESHAIS 697

Query: 637 DSHCG 651
           DS  G
Sbjct: 698 DSELG 702


>SPCPB16A4.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 126

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = -1

Query: 700 NDSL*GELGTGPPLEYCRSGCRGTGAGIGSRKITKASVWRSHGPRG 563
           N S  G+L T PP  +     +  G+   + +  +    RSHGP+G
Sbjct: 16  NQSSEGQLSTSPPRRWRNCTLQRHGSRASADEFCEQYRSRSHGPQG 61


>SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 537

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 15/57 (26%), Positives = 26/57 (45%)
 Frame = +1

Query: 454 QIQFETASRRVKTSPEEEERANRRQEKTRSYALRRSSHEDRVNAILKPSLFSSNQSQ 624
           +I F++ +   K   E +E+ N  +EK     L      D V    + ++FS  QS+
Sbjct: 151 KISFDSVAELAK---ESDEKQNAYEEKIEERILANPDESDDVMLAARDAIFSKGQSK 204


>SPAC17G8.11c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 356

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = +3

Query: 303 NITTPSLLH--SVLQRTTPASISGELYARAKGFP 398
           N T   LLH  + ++RT+P+ IS  +   AKG P
Sbjct: 146 NRTLDPLLHYPAWVRRTSPSGISNNVMGFAKGHP 179


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +1

Query: 562 SHEDRVNAILKPSLFSSNQSQHPFRDSHCGNTRGGARYPIRPI 690
           S ++ +   L+PS+       +P R +   N  G  R PIRP+
Sbjct: 481 SVQEELTNTLEPSVLKQLHLANPNRQAASFNFSGPKRAPIRPL 523


>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 16/57 (28%), Positives = 26/57 (45%)
 Frame = +2

Query: 485 SRPLQKKRREPIDDKKRLAPTPCAGQATRTV*TPY*SLRYFPRTNPSTRSATATAAI 655
           SR     RR+P+ D +  +P+P A  + +    P    R F       +S+T+T  I
Sbjct: 566 SRNTSLARRKPLPDTESHSPSPSATSSIKK--NPSSIFRRFSSRRKQNKSSTSTLQI 620


>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 807

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 23/82 (28%), Positives = 33/82 (40%), Gaps = 2/82 (2%)
 Frame = +3

Query: 462 VRDSEPASQDLSRRRGESQSTTRKDSLLRPAPVKPRGPCERHTEAFVIFLEPIPAPVPRQ 641
           V  +  A +  S  +G+ +S + K  LLRP P     P  +  +    F+   P P P  
Sbjct: 387 VNKNAAADRTTSPTQGQPESPS-KSILLRPPPSIASSPESKRRKCPKKFVARPPVPHPTS 445

Query: 642 PLRQYSRGGPV--PNSPYSESF 701
              Q   G P   P    S+SF
Sbjct: 446 LYSQIRIGCPYLKPKLVISKSF 467


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,448,871
Number of Sequences: 5004
Number of extensions: 47178
Number of successful extensions: 176
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)