Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-4447
(718 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF100306-10|AAC68926.1| 798|Caenorhabditis elegans Hypothetical... 31 0.82
Z79752-6|CAB02080.2| 423|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z35637-5|CAE17723.1| 185|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z48367-5|CAE54886.1| 993|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z47808-7|CAA87771.2| 934|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z92807-2|CAD21652.1| 689|Caenorhabditis elegans Hypothetical pr... 28 5.8
Z92807-1|CAB07264.1| 747|Caenorhabditis elegans Hypothetical pr... 28 5.8
AF099925-3|AAC69507.1| 394|Caenorhabditis elegans Collagen prot... 28 5.8
AB039949-1|BAC06512.1| 747|Caenorhabditis elegans kinesin protein. 28 5.8
AB017164-1|BAA32661.1| 689|Caenorhabditis elegans Kinesin like ... 28 5.8
Z34801-2|CAD82919.1| 884|Caenorhabditis elegans Hypothetical pr... 28 7.7
Z34801-1|CAA84330.1| 860|Caenorhabditis elegans Hypothetical pr... 28 7.7
X72942-1|CAA51447.1| 335|Caenorhabditis elegans Wnt-1 protein. 28 7.7
X72941-1|CAA51446.1| 372|Caenorhabditis elegans Wnt-1 protein p... 28 7.7
U41746-9|AAA83334.3| 559|Caenorhabditis elegans Groundhog (hedg... 28 7.7
U28943-17|AAK68292.2| 811|Caenorhabditis elegans Clc-type chlo... 28 7.7
U28943-16|AAK68291.1| 1001|Caenorhabditis elegans Clc-type chlo... 28 7.7
AL033514-5|CAA22082.1| 773|Caenorhabditis elegans Hypothetical ... 28 7.7
AF319614-1|AAG49524.1| 1001|Caenorhabditis elegans CLC-type chlo... 28 7.7
AF173172-1|AAF13165.1| 811|Caenorhabditis elegans CLC chloride ... 28 7.7
AF025463-6|AAO38623.1| 332|Caenorhabditis elegans C. elegans wn... 28 7.7
AF025463-5|AAB71011.1| 372|Caenorhabditis elegans C. elegans wn... 28 7.7
>AF100306-10|AAC68926.1| 798|Caenorhabditis elegans Hypothetical
protein T24C4.7 protein.
Length = 798
Score = 31.1 bits (67), Expect = 0.82
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Frame = +3
Query: 462 VRDSEPASQ---DLSRRRGESQSTTRKDSLLRPAPVKPRGPCERHTEAFVIFLEPIPAPV 632
++DS P Q ++ RRR ES+ T L P ++P P ERH + EP P+
Sbjct: 646 LQDSTPIEQILNEVGRRRLESEITVEDPEDLAPPILEPMEPTERHLDTEEEEEEPNQIPM 705
>Z79752-6|CAB02080.2| 423|Caenorhabditis elegans Hypothetical
protein D2005.6 protein.
Length = 423
Score = 29.9 bits (64), Expect = 1.9
Identities = 20/55 (36%), Positives = 24/55 (43%), Gaps = 7/55 (12%)
Frame = +2
Query: 305 HHNSKPASLSPAAHHPCLDKRGVICPGKGV---SPRPAPCP----RKGVRRPRLT 448
H+N +PAS P A+ P G G P+PAP P R RPR T
Sbjct: 93 HYNYQPASAYPGAYGPYAGAYGPYAGASGAYRPYPQPAPSPPRRSRTAPSRPRST 147
>Z35637-5|CAE17723.1| 185|Caenorhabditis elegans Hypothetical
protein C03C10.7 protein.
Length = 185
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = +1
Query: 466 ETASRRVKTSPEEEERANRRQEKTRSYALRRSSHE 570
E A + VK EEEE+A ++++ R +RR +HE
Sbjct: 48 EEAKKEVKRRIEEEEKA--KEQRKRDEEIRRETHE 80
>Z48367-5|CAE54886.1| 993|Caenorhabditis elegans Hypothetical
protein C33B4.3b protein.
Length = 993
Score = 28.7 bits (61), Expect = 4.4
Identities = 21/67 (31%), Positives = 25/67 (37%), Gaps = 2/67 (2%)
Frame = +3
Query: 492 LSRRRGESQSTTRKDSLLRPAPVKPRGPCERHTEAFVIFLEPIPA--PVPRQPLRQYSRG 665
L R Q ++ S + P P P P T V F P + P P PL S G
Sbjct: 747 LPRSASTPQPIQQQQSSIPPPPPPPPPPHCEPTMVHVEFTPPSTSSVPPPPPPLPPISSG 806
Query: 666 GPVPNSP 686
P P P
Sbjct: 807 APPPPPP 813
>Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical
protein C33B4.3a protein.
Length = 1110
Score = 28.7 bits (61), Expect = 4.4
Identities = 21/67 (31%), Positives = 25/67 (37%), Gaps = 2/67 (2%)
Frame = +3
Query: 492 LSRRRGESQSTTRKDSLLRPAPVKPRGPCERHTEAFVIFLEPIPA--PVPRQPLRQYSRG 665
L R Q ++ S + P P P P T V F P + P P PL S G
Sbjct: 747 LPRSASTPQPIQQQQSSIPPPPPPPPPPHCEPTMVHVEFTPPSTSSVPPPPPPLPPISSG 806
Query: 666 GPVPNSP 686
P P P
Sbjct: 807 APPPPPP 813
>Z47808-7|CAA87771.2| 934|Caenorhabditis elegans Hypothetical
protein D2013.5 protein.
Length = 934
Score = 28.7 bits (61), Expect = 4.4
Identities = 10/29 (34%), Positives = 14/29 (48%)
Frame = -3
Query: 665 PPRVLPQWLSRNGCWDWFEENNEGFSMAF 579
P LP+W NG W+ F + +G F
Sbjct: 111 PDLSLPEWFDSNGSWNEFSQKMKGIKDGF 139
>Z92807-2|CAD21652.1| 689|Caenorhabditis elegans Hypothetical
protein K11D9.1b protein.
Length = 689
Score = 28.3 bits (60), Expect = 5.8
Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 9/81 (11%)
Frame = +3
Query: 462 VRDSEPASQDLSRRRGESQS--------TTRKDSLLRPAPVKPRGPCERHTEAFVIFLEP 617
VR + P+ + L RR S +TR + +P +HT + + P
Sbjct: 128 VRMAPPSEKPLPTRRAPSPKEDAAPAPKSTRTTAAFKPDLDSTAITVPKHTARRTVVVAP 187
Query: 618 IPAPVPRQPL-RQYSRGGPVP 677
PAPVP P+ S+ P P
Sbjct: 188 APAPVPAPPIANMTSQRAPSP 208
>Z92807-1|CAB07264.1| 747|Caenorhabditis elegans Hypothetical
protein K11D9.1a protein.
Length = 747
Score = 28.3 bits (60), Expect = 5.8
Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 9/81 (11%)
Frame = +3
Query: 462 VRDSEPASQDLSRRRGESQS--------TTRKDSLLRPAPVKPRGPCERHTEAFVIFLEP 617
VR + P+ + L RR S +TR + +P +HT + + P
Sbjct: 186 VRMAPPSEKPLPTRRAPSPKEDAAPAPKSTRTTAAFKPDLDSTAITVPKHTARRTVVVAP 245
Query: 618 IPAPVPRQPL-RQYSRGGPVP 677
PAPVP P+ S+ P P
Sbjct: 246 APAPVPAPPIANMTSQRAPSP 266
>AF099925-3|AAC69507.1| 394|Caenorhabditis elegans Collagen protein
69 protein.
Length = 394
Score = 28.3 bits (60), Expect = 5.8
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +1
Query: 298 HPTSQLQACFTQSCSAPPLPR*AGSYMPGQRGFPEARSV 414
HPT Q C Q+ + PP P+ Y PG G P +R +
Sbjct: 123 HPTQQQCNCAPQANNCPPGPQGPTGY-PGAPGEPGSRGL 160
>AB039949-1|BAC06512.1| 747|Caenorhabditis elegans kinesin protein.
Length = 747
Score = 28.3 bits (60), Expect = 5.8
Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 9/81 (11%)
Frame = +3
Query: 462 VRDSEPASQDLSRRRGESQS--------TTRKDSLLRPAPVKPRGPCERHTEAFVIFLEP 617
VR + P+ + L RR S +TR + +P +HT + + P
Sbjct: 186 VRMAPPSEKPLPTRRAPSPKEDAAPAPKSTRTTAAFKPDLDSTAITVPKHTARRTVVVAP 245
Query: 618 IPAPVPRQPL-RQYSRGGPVP 677
PAPVP P+ S+ P P
Sbjct: 246 APAPVPAPPIANMTSQRAPSP 266
>AB017164-1|BAA32661.1| 689|Caenorhabditis elegans Kinesin like
protein (klp-7) protein.
Length = 689
Score = 28.3 bits (60), Expect = 5.8
Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 9/81 (11%)
Frame = +3
Query: 462 VRDSEPASQDLSRRRGESQS--------TTRKDSLLRPAPVKPRGPCERHTEAFVIFLEP 617
VR + P+ + L RR S +TR + +P +HT + + P
Sbjct: 128 VRMAPPSEKPLPTRRAPSPKEDAAPAPKSTRTTAAFKPDLDSTAITVPKHTARRTVVVAP 187
Query: 618 IPAPVPRQPL-RQYSRGGPVP 677
PAPVP P+ S+ P P
Sbjct: 188 APAPVPAPPIANMTSQRAPSP 208
>Z34801-2|CAD82919.1| 884|Caenorhabditis elegans Hypothetical
protein F59A2.1b protein.
Length = 884
Score = 27.9 bits (59), Expect = 7.7
Identities = 30/128 (23%), Positives = 48/128 (37%)
Frame = +3
Query: 294 IPPNITTPSLLHSVLQRTTPASISGELYARAKGFPRGPLRAPARGYDDPD*LTANSVRDS 473
IPP +LQR + A+A + +A A+ + L N+ + +
Sbjct: 95 IPPQQLQQQQQMLILQRQMEMAHVQAAQAQAHAHAQAQAQAQAQSQVMANLL--NAAKPA 152
Query: 474 EPASQDLSRRRGESQSTTRKDSLLRPAPVKPRGPCERHTEAFVIFLEPIPAPVPRQPLRQ 653
P +Q L +++ST ++ P P A F P PA VP+
Sbjct: 153 IPVTQPLVATTAQAKSTVPASGVIAPKTSPPEVVIP---PAKPTFSTPTPAVVPKPATTG 209
Query: 654 YSRGGPVP 677
+S GG P
Sbjct: 210 FSFGGTNP 217
>Z34801-1|CAA84330.1| 860|Caenorhabditis elegans Hypothetical
protein F59A2.1a protein.
Length = 860
Score = 27.9 bits (59), Expect = 7.7
Identities = 30/128 (23%), Positives = 48/128 (37%)
Frame = +3
Query: 294 IPPNITTPSLLHSVLQRTTPASISGELYARAKGFPRGPLRAPARGYDDPD*LTANSVRDS 473
IPP +LQR + A+A + +A A+ + L N+ + +
Sbjct: 95 IPPQQLQQQQQMLILQRQMEMAHVQAAQAQAHAHAQAQAQAQAQSQVMANLL--NAAKPA 152
Query: 474 EPASQDLSRRRGESQSTTRKDSLLRPAPVKPRGPCERHTEAFVIFLEPIPAPVPRQPLRQ 653
P +Q L +++ST ++ P P A F P PA VP+
Sbjct: 153 IPVTQPLVATTAQAKSTVPASGVIAPKTSPPEVVIP---PAKPTFSTPTPAVVPKPATTG 209
Query: 654 YSRGGPVP 677
+S GG P
Sbjct: 210 FSFGGTNP 217
>X72942-1|CAA51447.1| 335|Caenorhabditis elegans Wnt-1 protein.
Length = 335
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = +3
Query: 528 RKDSLLRPAPVKPRGPCERHTEAFVIFLEPIPAPVPRQPLR 650
++D + +P V +RHT A ++++ P P PLR
Sbjct: 267 KEDGIEKPRIVMKNSQFKRHTNADLVYMTPSPDFCESDPLR 307
>X72941-1|CAA51446.1| 372|Caenorhabditis elegans Wnt-1 protein
protein.
Length = 372
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = +3
Query: 528 RKDSLLRPAPVKPRGPCERHTEAFVIFLEPIPAPVPRQPLR 650
++D + +P V +RHT A ++++ P P PLR
Sbjct: 267 KEDGIEKPRIVMKNSQFKRHTNADLVYMTPSPDFCESDPLR 307
>U41746-9|AAA83334.3| 559|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 6 protein.
Length = 559
Score = 27.9 bits (59), Expect = 7.7
Identities = 22/73 (30%), Positives = 30/73 (41%), Gaps = 11/73 (15%)
Frame = +3
Query: 510 ESQSTTRKDSLLRPAPVKP--RGPCERHTEAFVIFLE-PIPA--------PVPRQPLRQY 656
E + T L P P+ P +G ER ++E P+PA PVP +P
Sbjct: 139 EIEDTNYLSGRLTPGPIAPVTQGYSERPPATVAPYIERPVPARPTPYIERPVPARPAPYI 198
Query: 657 SRGGPVPNSPYSE 695
R P +PY E
Sbjct: 199 ERPEPARPAPYIE 211
>U28943-17|AAK68292.2| 811|Caenorhabditis elegans Clc-type
chloride channel protein3, isoform b protein.
Length = 811
Score = 27.9 bits (59), Expect = 7.7
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +1
Query: 460 QFETASRRVKTSPEEEERANRRQEKTRS 543
+F A+RR+K E+EE +R+E+++S
Sbjct: 693 RFAEATRRIKQRLEDEESERKRREESKS 720
>U28943-16|AAK68291.1| 1001|Caenorhabditis elegans Clc-type
chloride channel protein3, isoform a protein.
Length = 1001
Score = 27.9 bits (59), Expect = 7.7
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +1
Query: 460 QFETASRRVKTSPEEEERANRRQEKTRS 543
+F A+RR+K E+EE +R+E+++S
Sbjct: 622 RFAEATRRIKQRLEDEESERKRREESKS 649
>AL033514-5|CAA22082.1| 773|Caenorhabditis elegans Hypothetical
protein Y75B8A.4 protein.
Length = 773
Score = 27.9 bits (59), Expect = 7.7
Identities = 15/40 (37%), Positives = 17/40 (42%)
Frame = -2
Query: 486 DSPARCLELNLQSVSRGRRTPLRGHGAGLGETPLPGHITP 367
D P+ L VS PLR A GE L GH+ P
Sbjct: 669 DGPSAGTGLACALVSLATNIPLRSDAAVTGEISLTGHVLP 708
>AF319614-1|AAG49524.1| 1001|Caenorhabditis elegans CLC-type
chloride channel CLH-3b protein.
Length = 1001
Score = 27.9 bits (59), Expect = 7.7
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +1
Query: 460 QFETASRRVKTSPEEEERANRRQEKTRS 543
+F A+RR+K E+EE +R+E+++S
Sbjct: 622 RFAEATRRIKQRLEDEESERKRREESKS 649
>AF173172-1|AAF13165.1| 811|Caenorhabditis elegans CLC chloride
channel protein protein.
Length = 811
Score = 27.9 bits (59), Expect = 7.7
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +1
Query: 460 QFETASRRVKTSPEEEERANRRQEKTRS 543
+F A+RR+K E+EE +R+E+++S
Sbjct: 693 RFAEATRRIKQRLEDEESERKRREESKS 720
>AF025463-6|AAO38623.1| 332|Caenorhabditis elegans C. elegans wnt
family protein 1,isoform b protein.
Length = 332
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = +3
Query: 528 RKDSLLRPAPVKPRGPCERHTEAFVIFLEPIPAPVPRQPLR 650
++D + +P V +RHT A ++++ P P PLR
Sbjct: 267 KEDGIEKPRIVMKNSQFKRHTNADLVYMTPSPDFCESDPLR 307
>AF025463-5|AAB71011.1| 372|Caenorhabditis elegans C. elegans wnt
family protein 1,isoform a protein.
Length = 372
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = +3
Query: 528 RKDSLLRPAPVKPRGPCERHTEAFVIFLEPIPAPVPRQPLR 650
++D + +P V +RHT A ++++ P P PLR
Sbjct: 267 KEDGIEKPRIVMKNSQFKRHTNADLVYMTPSPDFCESDPLR 307
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,151,912
Number of Sequences: 27780
Number of extensions: 299923
Number of successful extensions: 1350
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1345
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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