Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-4446
(588 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces... 40 3e-04
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi... 33 0.031
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 29 0.67
SPAC4F8.14c |hcs1|hcs|3-hydroxy-3-methylglutaryl-CoA synthase|Sc... 26 4.7
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni... 26 4.7
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su... 26 4.7
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy... 25 6.2
SPAC4F8.08 |mug114||sequence orphan|Schizosaccharomyces pombe|ch... 25 8.2
SPAC1B3.17 |clr2||chromatin silencing protein Clr2|Schizosacchar... 25 8.2
SPAC22E12.17c |glo3||ARF GTPase activating protein|Schizosacchar... 25 8.2
SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces pomb... 25 8.2
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 25 8.2
>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 179
Score = 39.9 bits (89), Expect = 3e-04
Identities = 22/66 (33%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Frame = -3
Query: 256 QCHNCQLYGHSSRNCHARPRCVKC-LGDHATALCARDQKTATEPPSCVLCRTQGHPANYR 80
+C+NC GH +R C C C H + C Q+ T C C T GH R
Sbjct: 18 RCYNCGENGHQARECTKGSICYNCNQTGHKASECTEPQQEKT----CYACGTAGHLV--R 71
Query: 79 GCPRAP 62
CP +P
Sbjct: 72 DCPSSP 77
Score = 33.1 bits (72), Expect = 0.031
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = -3
Query: 253 CHNCQLYGHSSRNCHARPRCVKC--LGDHATALCARDQKTATEPPSCVLCRTQGHPA 89
C+ C YGH +R+C +C C +G H + C + A++ C C GH A
Sbjct: 118 CYACGSYGHQARDCTMGVKCYSCGKIG-HRSFEC----QQASDGQLCYKCNQPGHIA 169
Score = 27.1 bits (57), Expect = 2.0
Identities = 16/60 (26%), Positives = 21/60 (35%), Gaps = 3/60 (5%)
Frame = -3
Query: 259 SQCHNCQLYGHSSRNCHARPRCVKCLGDHATALCARDQKTATEP---PSCVLCRTQGHPA 89
S C+NC GH + C + C RD ++ P C C GH A
Sbjct: 36 SICYNCNQTGHKASECTEPQQEKTCYACGTAGHLVRDCPSSPNPRQGAECYKCGRVGHIA 95
>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
Air1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 313
Score = 33.1 bits (72), Expect = 0.031
Identities = 24/74 (32%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
Frame = -3
Query: 253 CHNCQLYGHSSRNCHARPRCVKC--LGDHATALCARDQKTATEPPSCVLCRTQGHPANYR 80
CHNC+ GH S++C C C + DH + C +K C+ C GH A
Sbjct: 89 CHNCKGNGHISKDC-PHVLCTTCGAIDDHISVRCPWTKK-------CMNCGLLGHIA--A 138
Query: 79 GCPRAPKINRRVAR 38
C K RV R
Sbjct: 139 RCSEPRKRGPRVCR 152
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 28.7 bits (61), Expect = 0.67
Identities = 16/59 (27%), Positives = 26/59 (44%)
Frame = -1
Query: 315 PSVGSLVSLSKPPIKKALLASAITVNCTGTLPVTVTRAPDVLSVWAITPRPSALATKKP 139
P+ S +PP SA++ + T LP +R P V + P+P ++T P
Sbjct: 1024 PTASQRASAYEPPTVSVPSPSALSPSVTPQLPPVSSRLPPVSATRPQIPQPPPVSTALP 1082
>SPAC4F8.14c |hcs1|hcs|3-hydroxy-3-methylglutaryl-CoA
synthase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 447
Score = 25.8 bits (54), Expect = 4.7
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +2
Query: 11 WAGSSEAVLAGDAAIYFRGSGATT 82
W G V+AGD A+Y +G+ T
Sbjct: 137 WDGRDGIVVAGDIALYAKGNARPT 160
>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 960
Score = 25.8 bits (54), Expect = 4.7
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = -3
Query: 394 RGREPYNMVLVALQPTPEGKKIFNTQTVCRLSGIAVEA 281
R PY ++ +P P+ + +T+CR IAV++
Sbjct: 540 RPLRPYAQIIY-FRPPPQASLVGRLRTICRNENIAVDS 576
>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
subunit |Schizosaccharomyces pombe|chr 1|||Manual
Length = 271
Score = 25.8 bits (54), Expect = 4.7
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -3
Query: 250 HNCQLYGHSSRNCHARPRCVKCL 182
HN ++ G +S+ H RP + CL
Sbjct: 38 HNGEIVGGASKTKHGRPWSISCL 60
>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 603
Score = 25.4 bits (53), Expect = 6.2
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = -1
Query: 174 TPRPSALATKKPRRNRLAASCVEHRVTPRITVVAPEPL 61
T PSA ++ P+ S TPRIT + PE L
Sbjct: 84 TTLPSATSSSVPQSRTSELSSTNSIPTPRITSLNPEEL 121
>SPAC4F8.08 |mug114||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 151
Score = 25.0 bits (52), Expect = 8.2
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +1
Query: 205 ARDSYGKSARTIDSYGTG*ECLFYGGLRQRYQRAYRRSV 321
AR Y K + + TG CLF G L++RY ++ V
Sbjct: 23 ARAGYFK-CKLLKITTTGAPCLFAGRLKRRYDATFQSMV 60
>SPAC1B3.17 |clr2||chromatin silencing protein
Clr2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 537
Score = 25.0 bits (52), Expect = 8.2
Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 9/78 (11%)
Frame = -1
Query: 363 SLSSLPPRVRKSLTHRPSVGSLVSL-------SKPPIKKALLASAITVNCTGTLPVTVTR 205
SL LP + K+L +R G L++ S PI L T N T TV
Sbjct: 30 SLKPLPHQDSKNLLYRQICGRLLAQHVFGGAGSTQPILNQLCKRLSTGNPNNTNASTVVT 89
Query: 204 APD--VLSVWAITPRPSA 157
AP+ V+S + P P +
Sbjct: 90 APEKNVVSARHVRPNPKS 107
>SPAC22E12.17c |glo3||ARF GTPase activating
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 486
Score = 25.0 bits (52), Expect = 8.2
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = -1
Query: 180 AITPRPSALATKKPRRNRLAASCVEHRVTPRITVVAPEPLK*IAASPAKTAS 25
A T +P+A+A+K+ + L + VE T V +P+K + S A S
Sbjct: 280 APTKKPAAVASKESTVDTLVDNGVEEVKESTSTTVQGKPVKPVLKSAASAKS 331
>SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.0 bits (52), Expect = 8.2
Identities = 8/19 (42%), Positives = 10/19 (52%)
Frame = -3
Query: 253 CHNCQLYGHSSRNCHARPR 197
C NC H ++C RPR
Sbjct: 113 CENCGAMSHKVKDCMERPR 131
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 25.0 bits (52), Expect = 8.2
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = -1
Query: 114 CVEHRVTPRITVVAPEPLK*IAASPAKT 31
C+ HR PR+ V P + + AKT
Sbjct: 197 CLSHRTVPRLRCVVIVPTRELTVQVAKT 224
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,340,268
Number of Sequences: 5004
Number of extensions: 49162
Number of successful extensions: 153
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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