Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-4446
(588 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF025471-8|AAB71060.1| 1019|Caenorhabditis elegans Hypothetical ... 37 0.009
AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA ... 36 0.016
AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line hel... 36 0.016
Z68297-6|CAE45045.1| 302|Caenorhabditis elegans Hypothetical pr... 35 0.049
U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase pr... 34 0.086
U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein. 34 0.086
U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GL... 34 0.086
L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase pr... 34 0.086
AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line hel... 34 0.086
AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line he... 34 0.086
U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein. 32 0.26
AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA ... 32 0.26
AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line hel... 32 0.26
AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated... 32 0.26
AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated... 32 0.26
AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated... 32 0.26
AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated... 32 0.26
AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated... 32 0.26
AF077533-3|AAC64626.1| 1023|Caenorhabditis elegans Hypothetical ... 32 0.35
Z81481-3|CAB03949.1| 1496|Caenorhabditis elegans Hypothetical pr... 30 1.1
AF025460-1|AAB70991.2| 293|Caenorhabditis elegans Hypothetical ... 30 1.1
Z48007-1|CAA88052.1| 1140|Caenorhabditis elegans Hypothetical pr... 30 1.4
Z93395-7|CAH04744.1| 2389|Caenorhabditis elegans Hypothetical pr... 29 1.9
Z93395-6|CAB07708.1| 3375|Caenorhabditis elegans Hypothetical pr... 29 1.9
Z93395-4|CAB07707.1| 2295|Caenorhabditis elegans Hypothetical pr... 29 1.9
Z93395-3|CAB07706.1| 2482|Caenorhabditis elegans Hypothetical pr... 29 1.9
Z93395-1|CAB07704.1| 1160|Caenorhabditis elegans Hypothetical pr... 29 1.9
Z93375-9|CAH04704.1| 2389|Caenorhabditis elegans Hypothetical pr... 29 1.9
Z93375-8|CAB07569.1| 3375|Caenorhabditis elegans Hypothetical pr... 29 1.9
Z93375-7|CAB07568.1| 2295|Caenorhabditis elegans Hypothetical pr... 29 1.9
Z93375-6|CAB07567.1| 2482|Caenorhabditis elegans Hypothetical pr... 29 1.9
Z80344-8|CAB02490.2| 2268|Caenorhabditis elegans Hypothetical pr... 29 1.9
Z71181-6|CAA94899.1| 647|Caenorhabditis elegans Hypothetical pr... 29 1.9
Z54236-5|CAA90980.1| 386|Caenorhabditis elegans Hypothetical pr... 29 1.9
L13458-1|AAA28156.1| 2481|Caenorhabditis elegans basement membra... 29 1.9
AL117203-22|CAB60425.1| 2268|Caenorhabditis elegans Hypothetical... 29 1.9
AC025727-10|AAK66029.1| 707|Caenorhabditis elegans Hypothetical... 29 1.9
AC006672-4|AAK84542.1| 151|Caenorhabditis elegans Hypothetical ... 29 2.4
AC006671-6|AAF39916.1| 411|Caenorhabditis elegans Hypothetical ... 29 2.4
U97593-1|AAB52875.1| 715|Caenorhabditis elegans Hypothetical pr... 29 3.2
U80837-3|AAB37904.2| 384|Caenorhabditis elegans Hypothetical pr... 28 4.3
AF100656-7|AAF99964.2| 615|Caenorhabditis elegans Hypothetical ... 28 4.3
U40938-2|AAQ65206.1| 463|Caenorhabditis elegans Hypothetical pr... 28 5.7
U40938-1|AAA81695.2| 465|Caenorhabditis elegans Hypothetical pr... 28 5.7
Z46242-11|CAA86326.1| 1077|Caenorhabditis elegans Hypothetical p... 27 7.5
AF256466-1|AAF71545.1| 1077|Caenorhabditis elegans SEL-5A serine... 27 7.5
AC024765-2|AAF60523.3| 345|Caenorhabditis elegans Hypothetical ... 27 7.5
Z68753-3|CAA92988.3| 984|Caenorhabditis elegans Hypothetical pr... 27 9.9
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote... 27 9.9
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 27 9.9
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 27 9.9
AF040652-7|AAB95017.1| 210|Caenorhabditis elegans Hypothetical ... 27 9.9
>AF025471-8|AAB71060.1| 1019|Caenorhabditis elegans Hypothetical
protein R52.2 protein.
Length = 1019
Score = 37.1 bits (82), Expect = 0.009
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = -3
Query: 253 CHNCQLYGHSSRNCHARPR-CVKCLGDHATALCARDQKTATEPPSCVLCRTQGHPANYR 80
C C GH C +RPR C C G+H T C + AT P+ +Q +N+R
Sbjct: 348 CFGCLRSGHQRSKC-SRPRTCNHCKGNHHTVFCQSHNRNATRNPNQREFGSQQMNSNHR 405
>AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA
helicase-3 protein.
Length = 720
Score = 36.3 bits (80), Expect = 0.016
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Frame = -3
Query: 268 GTPSQCHNCQLYGHSSRNCHARPR-CVKCLGD--HATALCARDQKTATEPPSCV 116
G + C NC+ YGH + C A R C C GD H CA K + P+ V
Sbjct: 199 GISNTCFNCKKYGHRATECSAPQRECANC-GDPNHRANECASWSKNGVQEPTKV 251
>AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line
helicase protein 3 protein.
Length = 720
Score = 36.3 bits (80), Expect = 0.016
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Frame = -3
Query: 268 GTPSQCHNCQLYGHSSRNCHARPR-CVKCLGD--HATALCARDQKTATEPPSCV 116
G + C NC+ YGH + C A R C C GD H CA K + P+ V
Sbjct: 199 GISNTCFNCKKYGHRATECSAPQRECANC-GDPNHRANECASWSKNGVQEPTKV 251
>Z68297-6|CAE45045.1| 302|Caenorhabditis elegans Hypothetical
protein F11A10.8 protein.
Length = 302
Score = 34.7 bits (76), Expect = 0.049
Identities = 23/73 (31%), Positives = 28/73 (38%), Gaps = 5/73 (6%)
Frame = -3
Query: 289 VEAPHKKGTPSQ---CHNCQLYGHSSRNCHARPRCVKCLGD--HATALCARDQKTATEPP 125
+ H K T SQ CHNC GH + C P + D H L K
Sbjct: 191 IAVSHAKPTYSQAITCHNCHERGHKATTCPHLPGQTRQNQDHHHRVDLSLIPDKKNLSDV 250
Query: 124 SCVLCRTQGHPAN 86
+C C +GH AN
Sbjct: 251 TCYKCGEKGHYAN 263
>U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 33.9 bits (74), Expect = 0.086
Identities = 17/39 (43%), Positives = 20/39 (51%)
Frame = -3
Query: 328 FNTQTVCRLSGIAVEAPHKKGTPSQCHNCQLYGHSSRNC 212
FN Q S E P K+ P C+NCQ GH+SR C
Sbjct: 161 FNCQQPGHRSSDCPE-PRKEREPRVCYNCQQPGHTSREC 198
Score = 29.5 bits (63), Expect = 1.9
Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Frame = -3
Query: 262 PSQCHNCQLYGHSSRNCHARPR-CVKC 185
P +C NC+ GH S C PR C C
Sbjct: 241 PMKCFNCKGEGHRSAECPEPPRGCFNC 267
>U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein.
Length = 974
Score = 33.9 bits (74), Expect = 0.086
Identities = 17/39 (43%), Positives = 21/39 (53%)
Frame = -3
Query: 328 FNTQTVCRLSGIAVEAPHKKGTPSQCHNCQLYGHSSRNC 212
FN Q S E P K+ P C+NCQ GH+SR+C
Sbjct: 260 FNCQQPGHRSNDCPE-PKKEREPRVCYNCQQPGHNSRDC 297
Score = 33.9 bits (74), Expect = 0.086
Identities = 17/39 (43%), Positives = 21/39 (53%)
Frame = -3
Query: 328 FNTQTVCRLSGIAVEAPHKKGTPSQCHNCQLYGHSSRNC 212
FN Q S E P K+ P C+NCQ GH+SR+C
Sbjct: 374 FNCQQPGHRSNDCPE-PKKEREPRVCYNCQQPGHNSRDC 411
Score = 29.5 bits (63), Expect = 1.9
Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Frame = -3
Query: 262 PSQCHNCQLYGHSSRNCHARPR-CVKC 185
P +C NC+ GH S C PR C C
Sbjct: 452 PMKCFNCKGEGHRSAECPEPPRGCFNC 478
>U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GLH-2
protein.
Length = 974
Score = 33.9 bits (74), Expect = 0.086
Identities = 17/39 (43%), Positives = 21/39 (53%)
Frame = -3
Query: 328 FNTQTVCRLSGIAVEAPHKKGTPSQCHNCQLYGHSSRNC 212
FN Q S E P K+ P C+NCQ GH+SR+C
Sbjct: 260 FNCQQPGHRSNDCPE-PKKEREPRVCYNCQQPGHNSRDC 297
Score = 33.9 bits (74), Expect = 0.086
Identities = 17/39 (43%), Positives = 21/39 (53%)
Frame = -3
Query: 328 FNTQTVCRLSGIAVEAPHKKGTPSQCHNCQLYGHSSRNC 212
FN Q S E P K+ P C+NCQ GH+SR+C
Sbjct: 374 FNCQQPGHRSNDCPE-PKKEREPRVCYNCQQPGHNSRDC 411
Score = 29.5 bits (63), Expect = 1.9
Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Frame = -3
Query: 262 PSQCHNCQLYGHSSRNCHARPR-CVKC 185
P +C NC+ GH S C PR C C
Sbjct: 452 PMKCFNCKGEGHRSAECPEPPRGCFNC 478
>L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 33.9 bits (74), Expect = 0.086
Identities = 17/39 (43%), Positives = 20/39 (51%)
Frame = -3
Query: 328 FNTQTVCRLSGIAVEAPHKKGTPSQCHNCQLYGHSSRNC 212
FN Q S E P K+ P C+NCQ GH+SR C
Sbjct: 161 FNCQQPGHRSSDCPE-PRKEREPRVCYNCQQPGHTSREC 198
Score = 29.5 bits (63), Expect = 1.9
Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Frame = -3
Query: 262 PSQCHNCQLYGHSSRNCHARPR-CVKC 185
P +C NC+ GH S C PR C C
Sbjct: 241 PMKCFNCKGEGHRSAECPEPPRGCFNC 267
>AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line
helicase protein 1 protein.
Length = 763
Score = 33.9 bits (74), Expect = 0.086
Identities = 17/39 (43%), Positives = 20/39 (51%)
Frame = -3
Query: 328 FNTQTVCRLSGIAVEAPHKKGTPSQCHNCQLYGHSSRNC 212
FN Q S E P K+ P C+NCQ GH+SR C
Sbjct: 161 FNCQQPGHRSSDCPE-PRKEREPRVCYNCQQPGHTSREC 198
Score = 29.5 bits (63), Expect = 1.9
Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Frame = -3
Query: 262 PSQCHNCQLYGHSSRNCHARPR-CVKC 185
P +C NC+ GH S C PR C C
Sbjct: 241 PMKCFNCKGEGHRSAECPEPPRGCFNC 267
>AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line
helicase protein 2 protein.
Length = 974
Score = 33.9 bits (74), Expect = 0.086
Identities = 17/39 (43%), Positives = 21/39 (53%)
Frame = -3
Query: 328 FNTQTVCRLSGIAVEAPHKKGTPSQCHNCQLYGHSSRNC 212
FN Q S E P K+ P C+NCQ GH+SR+C
Sbjct: 260 FNCQQPGHRSNDCPE-PKKEREPRVCYNCQQPGHNSRDC 297
Score = 33.9 bits (74), Expect = 0.086
Identities = 17/39 (43%), Positives = 21/39 (53%)
Frame = -3
Query: 328 FNTQTVCRLSGIAVEAPHKKGTPSQCHNCQLYGHSSRNC 212
FN Q S E P K+ P C+NCQ GH+SR+C
Sbjct: 374 FNCQQPGHRSNDCPE-PKKEREPRVCYNCQQPGHNSRDC 411
Score = 29.5 bits (63), Expect = 1.9
Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Frame = -3
Query: 262 PSQCHNCQLYGHSSRNCHARPR-CVKC 185
P +C NC+ GH S C PR C C
Sbjct: 452 PMKCFNCKGEGHRSAECPEPPRGCFNC 478
>U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.
Length = 6632
Score = 32.3 bits (70), Expect = 0.26
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -1
Query: 294 SLSKPPIKKALLASAITVNCTGTLPVTVTRAPDVLSVWAITPRP 163
SL KP + L+ + + +N T TL VTV PD W +P
Sbjct: 3282 SLEKPTFVRELVTTEVKINETATLSVTVKGVPDPSVEWLKDGQP 3325
>AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA
helicase-4 protein.
Length = 1156
Score = 32.3 bits (70), Expect = 0.26
Identities = 27/74 (36%), Positives = 32/74 (43%), Gaps = 6/74 (8%)
Frame = -3
Query: 262 PSQCHNCQLYGHSSRNCHAR--PR--CVKC--LGDHATALCARDQKTATEPPSCVLCRTQ 101
P CHNC GH S+ C PR C C LG H + C DQ P C C +
Sbjct: 569 PRGCHNCGEEGHISKECDKPKVPRFPCRNCEQLG-HFASDC--DQPRVPRGP-CRNCGIE 624
Query: 100 GHPANYRGCPRAPK 59
GH A P+ P+
Sbjct: 625 GHFAVDCDQPKVPR 638
>AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line
helicase protein 4 protein.
Length = 1156
Score = 32.3 bits (70), Expect = 0.26
Identities = 27/74 (36%), Positives = 32/74 (43%), Gaps = 6/74 (8%)
Frame = -3
Query: 262 PSQCHNCQLYGHSSRNCHAR--PR--CVKC--LGDHATALCARDQKTATEPPSCVLCRTQ 101
P CHNC GH S+ C PR C C LG H + C DQ P C C +
Sbjct: 569 PRGCHNCGEEGHISKECDKPKVPRFPCRNCEQLG-HFASDC--DQPRVPRGP-CRNCGIE 624
Query: 100 GHPANYRGCPRAPK 59
GH A P+ P+
Sbjct: 625 GHFAVDCDQPKVPR 638
>AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated
protein 89, isoform e protein.
Length = 5992
Score = 32.3 bits (70), Expect = 0.26
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -1
Query: 294 SLSKPPIKKALLASAITVNCTGTLPVTVTRAPDVLSVWAITPRP 163
SL KP + L+ + + +N T TL VTV PD W +P
Sbjct: 2642 SLEKPTFVRELVTTEVKINETATLSVTVKGVPDPSVEWLKDGQP 2685
>AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated
protein 89, isoform a protein.
Length = 6632
Score = 32.3 bits (70), Expect = 0.26
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -1
Query: 294 SLSKPPIKKALLASAITVNCTGTLPVTVTRAPDVLSVWAITPRP 163
SL KP + L+ + + +N T TL VTV PD W +P
Sbjct: 3282 SLEKPTFVRELVTTEVKINETATLSVTVKGVPDPSVEWLKDGQP 3325
>AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated
protein 89, isoform g protein.
Length = 7122
Score = 32.3 bits (70), Expect = 0.26
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -1
Query: 294 SLSKPPIKKALLASAITVNCTGTLPVTVTRAPDVLSVWAITPRP 163
SL KP + L+ + + +N T TL VTV PD W +P
Sbjct: 3282 SLEKPTFVRELVTTEVKINETATLSVTVKGVPDPSVEWLKDGQP 3325
>AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated
protein 89, isoform f protein.
Length = 7441
Score = 32.3 bits (70), Expect = 0.26
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -1
Query: 294 SLSKPPIKKALLASAITVNCTGTLPVTVTRAPDVLSVWAITPRP 163
SL KP + L+ + + +N T TL VTV PD W +P
Sbjct: 2642 SLEKPTFVRELVTTEVKINETATLSVTVKGVPDPSVEWLKDGQP 2685
>AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated
protein 89, isoform b protein.
Length = 8081
Score = 32.3 bits (70), Expect = 0.26
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -1
Query: 294 SLSKPPIKKALLASAITVNCTGTLPVTVTRAPDVLSVWAITPRP 163
SL KP + L+ + + +N T TL VTV PD W +P
Sbjct: 3282 SLEKPTFVRELVTTEVKINETATLSVTVKGVPDPSVEWLKDGQP 3325
>AF077533-3|AAC64626.1| 1023|Caenorhabditis elegans Hypothetical
protein F54G2.2 protein.
Length = 1023
Score = 31.9 bits (69), Expect = 0.35
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Frame = -3
Query: 196 CVKC--LGDH--ATALCARDQKTATEPPSCVLCRTQGHPANYRGCPRAPKINRRVARQNR 29
C +C +G H + +L + K PP C C GH + Y CP+ +I+R +Q +
Sbjct: 581 CAECKQVGGHEPSCSLAPKTWKRERPPPQCFTCGEMGHISTY--CPK--RIDRVQQQQTQ 636
Query: 28 LRASGPDIK 2
+S D++
Sbjct: 637 PNSSVNDVE 645
>Z81481-3|CAB03949.1| 1496|Caenorhabditis elegans Hypothetical
protein C38D9.3 protein.
Length = 1496
Score = 30.3 bits (65), Expect = 1.1
Identities = 10/36 (27%), Positives = 16/36 (44%)
Frame = -3
Query: 253 CHNCQLYGHSSRNCHARPRCVKCLGDHATALCARDQ 146
C NC H + C + C C+G H + C + +
Sbjct: 731 CANCLNPHHDIKKCRSYRSCAYCMGKHHSGACPKKE 766
>AF025460-1|AAB70991.2| 293|Caenorhabditis elegans Hypothetical
protein F53A3.6 protein.
Length = 293
Score = 30.3 bits (65), Expect = 1.1
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = -1
Query: 267 ALLASAITVNCTGTLPVTVTRAPDVLSV--WAITPRPSALATKKP 139
A A A T+P PDV+++ A T +PSA A K+P
Sbjct: 13 AAAAQAAQAQAQATIPTPTVNLPDVVAIAAAAATAQPSAAAAKRP 57
>Z48007-1|CAA88052.1| 1140|Caenorhabditis elegans Hypothetical protein
R134.1 protein.
Length = 1140
Score = 29.9 bits (64), Expect = 1.4
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Frame = -3
Query: 553 KERISFHTYTLQEE--RELRVVIRGIPKELDVELVKAD-LLEQGLPVNSVHRMHTGRGRE 383
K + H + + EE L V + KEL +E KAD LL + LP R+ G+ E
Sbjct: 830 KSNLMDHVFNMLEEYTSTLEVEVEERTKELTLEKKKADLLLSRMLPKQVAERLKAGQTVE 889
Query: 382 P 380
P
Sbjct: 890 P 890
>Z93395-7|CAH04744.1| 2389|Caenorhabditis elegans Hypothetical protein
ZC101.2f protein.
Length = 2389
Score = 29.5 bits (63), Expect = 1.9
Identities = 20/71 (28%), Positives = 27/71 (38%), Gaps = 12/71 (16%)
Frame = -3
Query: 274 KKGTPSQCHN------CQLYGHSSRNCHARPRCVKCLGDHATALCARDQK------TATE 131
++GTP+ C C HS R C + RC+ C + C R +K T
Sbjct: 995 RRGTPNDCQPEATRAPCHCNNHSPRGCDSFGRCLLCEHNTEGTHCERCKKGYYGDATKGS 1054
Query: 130 PPSCVLCRTQG 98
P C C G
Sbjct: 1055 PYDCTPCPCPG 1065
>Z93395-6|CAB07708.1| 3375|Caenorhabditis elegans Hypothetical protein
ZC101.2e protein.
Length = 3375
Score = 29.5 bits (63), Expect = 1.9
Identities = 20/71 (28%), Positives = 27/71 (38%), Gaps = 12/71 (16%)
Frame = -3
Query: 274 KKGTPSQCHN------CQLYGHSSRNCHARPRCVKCLGDHATALCARDQK------TATE 131
++GTP+ C C HS R C + RC+ C + C R +K T
Sbjct: 995 RRGTPNDCQPEATRAPCHCNNHSPRGCDSFGRCLLCEHNTEGTHCERCKKGYYGDATKGS 1054
Query: 130 PPSCVLCRTQG 98
P C C G
Sbjct: 1055 PYDCTPCPCPG 1065
>Z93395-4|CAB07707.1| 2295|Caenorhabditis elegans Hypothetical protein
ZC101.2c protein.
Length = 2295
Score = 29.5 bits (63), Expect = 1.9
Identities = 20/71 (28%), Positives = 27/71 (38%), Gaps = 12/71 (16%)
Frame = -3
Query: 274 KKGTPSQCHN------CQLYGHSSRNCHARPRCVKCLGDHATALCARDQK------TATE 131
++GTP+ C C HS R C + RC+ C + C R +K T
Sbjct: 995 RRGTPNDCQPEATRAPCHCNNHSPRGCDSFGRCLLCEHNTEGTHCERCKKGYYGDATKGS 1054
Query: 130 PPSCVLCRTQG 98
P C C G
Sbjct: 1055 PYDCTPCPCPG 1065
>Z93395-3|CAB07706.1| 2482|Caenorhabditis elegans Hypothetical protein
ZC101.2a protein.
Length = 2482
Score = 29.5 bits (63), Expect = 1.9
Identities = 20/71 (28%), Positives = 27/71 (38%), Gaps = 12/71 (16%)
Frame = -3
Query: 274 KKGTPSQCHN------CQLYGHSSRNCHARPRCVKCLGDHATALCARDQK------TATE 131
++GTP+ C C HS R C + RC+ C + C R +K T
Sbjct: 995 RRGTPNDCQPEATRAPCHCNNHSPRGCDSFGRCLLCEHNTEGTHCERCKKGYYGDATKGS 1054
Query: 130 PPSCVLCRTQG 98
P C C G
Sbjct: 1055 PYDCTPCPCPG 1065
>Z93395-1|CAB07704.1| 1160|Caenorhabditis elegans Hypothetical protein
ZC101.2b protein.
Length = 1160
Score = 29.5 bits (63), Expect = 1.9
Identities = 20/71 (28%), Positives = 27/71 (38%), Gaps = 12/71 (16%)
Frame = -3
Query: 274 KKGTPSQCHN------CQLYGHSSRNCHARPRCVKCLGDHATALCARDQK------TATE 131
++GTP+ C C HS R C + RC+ C + C R +K T
Sbjct: 995 RRGTPNDCQPEATRAPCHCNNHSPRGCDSFGRCLLCEHNTEGTHCERCKKGYYGDATKGS 1054
Query: 130 PPSCVLCRTQG 98
P C C G
Sbjct: 1055 PYDCTPCPCPG 1065
>Z93375-9|CAH04704.1| 2389|Caenorhabditis elegans Hypothetical protein
ZC101.2f protein.
Length = 2389
Score = 29.5 bits (63), Expect = 1.9
Identities = 20/71 (28%), Positives = 27/71 (38%), Gaps = 12/71 (16%)
Frame = -3
Query: 274 KKGTPSQCHN------CQLYGHSSRNCHARPRCVKCLGDHATALCARDQK------TATE 131
++GTP+ C C HS R C + RC+ C + C R +K T
Sbjct: 995 RRGTPNDCQPEATRAPCHCNNHSPRGCDSFGRCLLCEHNTEGTHCERCKKGYYGDATKGS 1054
Query: 130 PPSCVLCRTQG 98
P C C G
Sbjct: 1055 PYDCTPCPCPG 1065
>Z93375-8|CAB07569.1| 3375|Caenorhabditis elegans Hypothetical protein
ZC101.2e protein.
Length = 3375
Score = 29.5 bits (63), Expect = 1.9
Identities = 20/71 (28%), Positives = 27/71 (38%), Gaps = 12/71 (16%)
Frame = -3
Query: 274 KKGTPSQCHN------CQLYGHSSRNCHARPRCVKCLGDHATALCARDQK------TATE 131
++GTP+ C C HS R C + RC+ C + C R +K T
Sbjct: 995 RRGTPNDCQPEATRAPCHCNNHSPRGCDSFGRCLLCEHNTEGTHCERCKKGYYGDATKGS 1054
Query: 130 PPSCVLCRTQG 98
P C C G
Sbjct: 1055 PYDCTPCPCPG 1065
>Z93375-7|CAB07568.1| 2295|Caenorhabditis elegans Hypothetical protein
ZC101.2c protein.
Length = 2295
Score = 29.5 bits (63), Expect = 1.9
Identities = 20/71 (28%), Positives = 27/71 (38%), Gaps = 12/71 (16%)
Frame = -3
Query: 274 KKGTPSQCHN------CQLYGHSSRNCHARPRCVKCLGDHATALCARDQK------TATE 131
++GTP+ C C HS R C + RC+ C + C R +K T
Sbjct: 995 RRGTPNDCQPEATRAPCHCNNHSPRGCDSFGRCLLCEHNTEGTHCERCKKGYYGDATKGS 1054
Query: 130 PPSCVLCRTQG 98
P C C G
Sbjct: 1055 PYDCTPCPCPG 1065
>Z93375-6|CAB07567.1| 2482|Caenorhabditis elegans Hypothetical protein
ZC101.2a protein.
Length = 2482
Score = 29.5 bits (63), Expect = 1.9
Identities = 20/71 (28%), Positives = 27/71 (38%), Gaps = 12/71 (16%)
Frame = -3
Query: 274 KKGTPSQCHN------CQLYGHSSRNCHARPRCVKCLGDHATALCARDQK------TATE 131
++GTP+ C C HS R C + RC+ C + C R +K T
Sbjct: 995 RRGTPNDCQPEATRAPCHCNNHSPRGCDSFGRCLLCEHNTEGTHCERCKKGYYGDATKGS 1054
Query: 130 PPSCVLCRTQG 98
P C C G
Sbjct: 1055 PYDCTPCPCPG 1065
>Z80344-8|CAB02490.2| 2268|Caenorhabditis elegans Hypothetical
protein F15D4.7 protein.
Length = 2268
Score = 29.5 bits (63), Expect = 1.9
Identities = 10/36 (27%), Positives = 15/36 (41%)
Frame = -3
Query: 253 CHNCQLYGHSSRNCHARPRCVKCLGDHATALCARDQ 146
C NC H C + C C+G H + C + +
Sbjct: 692 CANCLNPHHDIEKCRSYRSCAYCMGKHHSGACPKKE 727
>Z71181-6|CAA94899.1| 647|Caenorhabditis elegans Hypothetical
protein K07C5.6 protein.
Length = 647
Score = 29.5 bits (63), Expect = 1.9
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -3
Query: 253 CHNCQLYGHSSRNCHARPR 197
C NC GH R+C RPR
Sbjct: 115 CENCGAMGHQKRDCFDRPR 133
>Z54236-5|CAA90980.1| 386|Caenorhabditis elegans Hypothetical
protein C27B7.5 protein.
Length = 386
Score = 29.5 bits (63), Expect = 1.9
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -3
Query: 271 KGTPSQCHNCQLYGHSSRNC 212
+G P C +CQ +GH SR C
Sbjct: 164 RGGPGHCFHCQEHGHISRMC 183
>L13458-1|AAA28156.1| 2481|Caenorhabditis elegans basement membrane
proteoglycan protein.
Length = 2481
Score = 29.5 bits (63), Expect = 1.9
Identities = 20/71 (28%), Positives = 27/71 (38%), Gaps = 12/71 (16%)
Frame = -3
Query: 274 KKGTPSQCHN------CQLYGHSSRNCHARPRCVKCLGDHATALCARDQK------TATE 131
++GTP+ C C HS R C + RC+ C + C R +K T
Sbjct: 994 RRGTPNDCQPEATRAPCHCNNHSPRGCDSFGRCLLCEHNTEGTHCERCKKGYYGDATKGS 1053
Query: 130 PPSCVLCRTQG 98
P C C G
Sbjct: 1054 PYDCTPCPCPG 1064
>AL117203-22|CAB60425.1| 2268|Caenorhabditis elegans Hypothetical
protein F15D4.7 protein.
Length = 2268
Score = 29.5 bits (63), Expect = 1.9
Identities = 10/36 (27%), Positives = 15/36 (41%)
Frame = -3
Query: 253 CHNCQLYGHSSRNCHARPRCVKCLGDHATALCARDQ 146
C NC H C + C C+G H + C + +
Sbjct: 692 CANCLNPHHDIEKCRSYRSCAYCMGKHHSGACPKKE 727
>AC025727-10|AAK66029.1| 707|Caenorhabditis elegans Hypothetical
protein Y73E7A.8 protein.
Length = 707
Score = 29.5 bits (63), Expect = 1.9
Identities = 25/83 (30%), Positives = 32/83 (38%), Gaps = 3/83 (3%)
Frame = -1
Query: 306 GSLVSLSKPPIKKALLASAIT---VNCTGTLPVTVTRAPDVLSVWAITPRPSALATKKPR 136
GS+ L PP L + T T T P T T P TP+ + + R
Sbjct: 347 GSIEELMSPPTTTTTLQTTTTRPQTTKTTTTPQTTTTRPQTTKT-TTTPQTTTTRLQTTR 405
Query: 135 RNRLAASCVEHRVTPRITVVAPE 67
R + RVTPR+ V PE
Sbjct: 406 RPPI-------RVTPRLPTVIPE 421
>AC006672-4|AAK84542.1| 151|Caenorhabditis elegans Hypothetical
protein K08D12.3a protein.
Length = 151
Score = 29.1 bits (62), Expect = 2.4
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -3
Query: 268 GTPSQCHNCQLYGHSSRNC 212
G S C+NCQ GH SR+C
Sbjct: 32 GGGSTCYNCQETGHFSRDC 50
>AC006671-6|AAF39916.1| 411|Caenorhabditis elegans Hypothetical
protein K08A2.1 protein.
Length = 411
Score = 29.1 bits (62), Expect = 2.4
Identities = 19/45 (42%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = -1
Query: 222 PVTVTRAPDVLSVWAITPRPSALA-TKKPRRNRLAASCVEHRVTP 91
P V APDV S TP+PS A T P R AA+ H+ P
Sbjct: 259 PSPVPTAPDVTSESPATPQPSPPAVTPPPPRLLPAATTESHQTEP 303
>U97593-1|AAB52875.1| 715|Caenorhabditis elegans Hypothetical
protein C46G7.3 protein.
Length = 715
Score = 28.7 bits (61), Expect = 3.2
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -3
Query: 259 SQCHNCQLYGHSSRNCHARPRCVKCLGDHATALC 158
++C C HSS C++ +C C G H A C
Sbjct: 648 NRCAVCAGERHSSSMCYSTLKCTYCSGRHHPAGC 681
>U80837-3|AAB37904.2| 384|Caenorhabditis elegans Hypothetical
protein F07E5.5 protein.
Length = 384
Score = 28.3 bits (60), Expect = 4.3
Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 7/67 (10%)
Frame = -3
Query: 274 KKGTPSQCHNCQLYGHSSRNCHARPR------CVKCLG-DHATALCARDQKTATEPPSCV 116
+K T S C +C+ GH +C R C KC +H+ C + +C
Sbjct: 224 QKITGSACFHCREPGHRLADCPKRNSSSSDGVCFKCGSMEHSIHECKKKGVKGFPYATCF 283
Query: 115 LCRTQGH 95
+C+ GH
Sbjct: 284 VCKQVGH 290
>AF100656-7|AAF99964.2| 615|Caenorhabditis elegans Hypothetical
protein F49F1.8 protein.
Length = 615
Score = 28.3 bits (60), Expect = 4.3
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -3
Query: 256 QCHNCQLYGHSSRNC 212
QCH C+ GH +RNC
Sbjct: 575 QCHYCKNVGHMARNC 589
>U40938-2|AAQ65206.1| 463|Caenorhabditis elegans Hypothetical
protein D1009.3b protein.
Length = 463
Score = 27.9 bits (59), Expect = 5.7
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -1
Query: 210 TRAPDVLSVWAITPRPSALATKKP 139
T ++ ++ A TP PS +ATKKP
Sbjct: 166 TEHHEIATIEATTPEPSEIATKKP 189
>U40938-1|AAA81695.2| 465|Caenorhabditis elegans Hypothetical
protein D1009.3a protein.
Length = 465
Score = 27.9 bits (59), Expect = 5.7
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -1
Query: 210 TRAPDVLSVWAITPRPSALATKKP 139
T ++ ++ A TP PS +ATKKP
Sbjct: 168 TEHHEIATIEATTPEPSEIATKKP 191
>Z46242-11|CAA86326.1| 1077|Caenorhabditis elegans Hypothetical
protein F35G12.3a protein.
Length = 1077
Score = 27.5 bits (58), Expect = 7.5
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 8/78 (10%)
Frame = -1
Query: 399 PVAVGSHIIWF*SLSSLPPRVRKSLTH--RPSVGSLVSLSKP------PIKKALLASAIT 244
P A II S +S P VR S T P +G+L+S+ P P+ K ++ T
Sbjct: 885 PTAAPVSIIPSMSNTSFPEAVRDSDTVPCEPIIGTLISVGAPTDPPPPPLPKKPTEASPT 944
Query: 243 VNCTGTLPVTVTRAPDVL 190
T T+PV + + +L
Sbjct: 945 QETTATIPVALGKKEKLL 962
>AF256466-1|AAF71545.1| 1077|Caenorhabditis elegans SEL-5A
serine/threonine kinase protein.
Length = 1077
Score = 27.5 bits (58), Expect = 7.5
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 8/78 (10%)
Frame = -1
Query: 399 PVAVGSHIIWF*SLSSLPPRVRKSLTH--RPSVGSLVSLSKP------PIKKALLASAIT 244
P A II S +S P VR S T P +G+L+S+ P P+ K ++ T
Sbjct: 885 PTAAPVSIIPSMSNTSFPEAVRDSDTVPCEPIIGTLISVGAPTDPPPPPLPKKPTEASPT 944
Query: 243 VNCTGTLPVTVTRAPDVL 190
T T+PV + + +L
Sbjct: 945 QETTATIPVALGKKEKLL 962
>AC024765-2|AAF60523.3| 345|Caenorhabditis elegans Hypothetical
protein Y39A3CR.6 protein.
Length = 345
Score = 27.5 bits (58), Expect = 7.5
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = -1
Query: 225 LPVTVTRAPDVLS--VWAITPRPSALATKKP 139
LPVTV +AP +L+ + P PS+L K P
Sbjct: 195 LPVTVPKAPPILASPLQKTPPPPSSLEVKSP 225
>Z68753-3|CAA92988.3| 984|Caenorhabditis elegans Hypothetical
protein ZC518.2 protein.
Length = 984
Score = 27.1 bits (57), Expect = 9.9
Identities = 21/62 (33%), Positives = 24/62 (38%)
Frame = -1
Query: 324 THRPSVGSLVSLSKPPIKKALLASAITVNCTGTLPVTVTRAPDVLSVWAITPRPSALATK 145
T PSVGS +PPI AL ++ P T P A PRP A A
Sbjct: 136 TPPPSVGSAAPSIQPPIPSALASARPAPFPAAQPPPAPTPTPSYQQQMA--PRPQAPAAY 193
Query: 144 KP 139
P
Sbjct: 194 PP 195
>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
protein.
Length = 10578
Score = 27.1 bits (57), Expect = 9.9
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = -1
Query: 219 VTVTRAPDVLSVWAITPRPSALATKKPRRNRLAASCVEHRVTPRITVVAPEP 64
V V + D + + I R A + R +RL +CV VT +++++P P
Sbjct: 8524 VFVKQRTDKIGIGIIFERSGASKKDESRPDRLDDNCVLTDVTDGLSILSPPP 8575
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 27.1 bits (57), Expect = 9.9
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = -1
Query: 219 VTVTRAPDVLSVWAITPRPSALATKKPRRNRLAASCVEHRVTPRITVVAPEP 64
V V + D + + I R A + R +RL +CV VT +++++P P
Sbjct: 8544 VFVKQRTDKIGIGIIFERSGASKKDESRPDRLDDNCVLTDVTDGLSILSPPP 8595
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 27.1 bits (57), Expect = 9.9
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = -1
Query: 219 VTVTRAPDVLSVWAITPRPSALATKKPRRNRLAASCVEHRVTPRITVVAPEP 64
V V + D + + I R A + R +RL +CV VT +++++P P
Sbjct: 8544 VFVKQRTDKIGIGIIFERSGASKKDESRPDRLDDNCVLTDVTDGLSILSPPP 8595
>AF040652-7|AAB95017.1| 210|Caenorhabditis elegans Hypothetical
protein T05A8.6 protein.
Length = 210
Score = 27.1 bits (57), Expect = 9.9
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = -1
Query: 348 PPRVRKSLTHRPSVGSLVSLSKPPIKKALLASAITVNCTGTLPVTVTRAPD 196
P RV+ LT P ++ + + P KA +CT T T T+APD
Sbjct: 65 PVRVKPVLTTTPGATTVTTTTAPTTTKA-------PDCTTTTAPTTTKAPD 108
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,483,748
Number of Sequences: 27780
Number of extensions: 309137
Number of successful extensions: 982
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 888
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 979
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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