Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4443
         (724 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24B11.05 |||pyrimidine 5'-nucleotidase |Schizosaccharomyces ...    29   0.51 
SPAC7D4.06c |alg3||dolichol-P-Man dependent alpha|Schizosaccharo...    28   1.2  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    27   2.1  
SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak...    27   3.6  
SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces...    26   4.7  
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula...    26   4.7  

>SPAC24B11.05 |||pyrimidine 5'-nucleotidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 226

 Score = 29.5 bits (63), Expect = 0.51
 Identities = 19/60 (31%), Positives = 33/60 (55%)
 Frame = +2

Query: 173 EILRRNCVTVKLKRTYSCTCTCSIYILNIHFDAKYLGSFL*RK*NKECKFDSLTYSMYNS 352
           E+LR   + ++L++ Y C    + YI++ +   KYLG        ++C FD +TY  YN+
Sbjct: 93  EVLRE--MLLELRKKYKCWIFTNAYIVHANRVLKYLGI-------EDC-FDGITYCDYNA 142


>SPAC7D4.06c |alg3||dolichol-P-Man dependent
           alpha|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 406

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -2

Query: 381 YLYNIARGILLLYMLYVNESNLHSLFYFR 295
           YL+ I R    +Y+L +    LHS+F  R
Sbjct: 122 YLFKIVRAPFYIYVLLILSKRLHSIFILR 150


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2493

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +3

Query: 69  ITLLPRSALVLLDVYLGVIWSCTS-SFPQLKK 161
           I  LPRS  V++ V +  I  CTS SF +L+K
Sbjct: 260 IYTLPRSKSVIIPVLISTIHHCTSDSFNELEK 291


>SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 708

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 26/83 (31%), Positives = 34/83 (40%)
 Frame = -1

Query: 622 LNQIKTRSFNMKRDVFNKIFTLKQRLQFNNLCTR*HKVLRQRKPFITSYELIIQFTLS*Q 443
           LN IKT SF +   +    +    R   N         LRQ KP + S    I   L   
Sbjct: 573 LNIIKTPSFTLDEKIQESYYMAHYRPLIN---------LRQPKPLLRSEADCIIKNLQNF 623

Query: 442 VTSDLHIIIHITFTTPKHSFISI 374
            T DL I  +  FT  K+S I++
Sbjct: 624 STDDLIIKSNEKFTAAKNSLINV 646


>SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 583

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
 Frame = +3

Query: 336 TACTIVIYRVQYCIDINECFGVVNVICMIICKS--DVTCYDKVNCIISSYEVM--NGFL 500
           T C I     +Y  DIN C  +   +  +IC +   V  Y +V  I+S+ +V+   GF+
Sbjct: 182 TTCAITF---RYWTDINSCAWITIFLVFVICINLFGVRGYGEVEFILSTLKVVATTGFI 237


>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
           protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1400

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 9/42 (21%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = +3

Query: 399 VVNVICMIICKSDVTCYDKVNCIISSYEVMNGFLWR--RTLC 518
           +VN++     K++VT ++  N +++ +  ++  +W+  R +C
Sbjct: 471 IVNILEKCALKNEVTIFESSNILLALFNTLSNGVWKDDRLVC 512


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,610,180
Number of Sequences: 5004
Number of extensions: 53863
Number of successful extensions: 131
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)