Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4443
         (724 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_03_0111 - 12440818-12441129,12441242-12441585,12441663-124419...    35   0.057
10_07_0098 - 12844631-12845074,12845329-12846570                       31   0.93 
09_04_0475 - 17913982-17914772,17914830-17915156,17915323-179154...    28   8.6  
04_01_0356 + 4663723-4664253                                           28   8.6  

>09_03_0111 -
           12440818-12441129,12441242-12441585,12441663-12441989,
           12443444-12443602,12443687-12443784,12444745-12444821
          Length = 438

 Score = 35.1 bits (77), Expect = 0.057
 Identities = 18/42 (42%), Positives = 23/42 (54%)
 Frame = +3

Query: 372 CIDINECFGVVNVICMIICKSDVTCYDKVNCIISSYEVMNGF 497
           C DINEC       CM ICK+ +  +D  +C   SY + NGF
Sbjct: 57  CKDINECLDNATYPCMGICKNTIGSFD-CSCYPGSY-MKNGF 96


>10_07_0098 - 12844631-12845074,12845329-12846570
          Length = 561

 Score = 31.1 bits (67), Expect = 0.93
 Identities = 12/33 (36%), Positives = 22/33 (66%)
 Frame = +3

Query: 75  LLPRSALVLLDVYLGVIWSCTSSFPQLKKNNNE 173
           +LP SAL+  ++YLG +WS   S  + +K +++
Sbjct: 33  VLPISALIYFNIYLGDVWSAMKSEKRRQKEHDD 65


>09_04_0475 -
           17913982-17914772,17914830-17915156,17915323-17915493,
           17915583-17915824,17915862-17916049,17916184-17916253,
           17916329-17916612
          Length = 690

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +3

Query: 372 CIDINECFGVVNVICMIICKSDVTCYDKVNCIISSYEVMNG 494
           C DINEC       C  IC++ +  Y K +C     E+  G
Sbjct: 260 CRDINECLDNTTYPCAGICENTIGSY-KCSCPQGQNELARG 299


>04_01_0356 + 4663723-4664253
          Length = 176

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 7/54 (12%)
 Frame = -3

Query: 398 AKTFVYIYTIL-------HAVYYYCTCCMLTSRICILCFISVTGSYLNISHRNV 258
           AK FV  Y +L       + V+YYC      S +CI+  ++ T  YL  SH +V
Sbjct: 50  AKDFVAGYPVLLDKSPWRYYVFYYCNATSFASSVCIIVLLA-TNFYL--SHTSV 100


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,000,572
Number of Sequences: 37544
Number of extensions: 275854
Number of successful extensions: 516
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 515
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)