Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4443
         (724 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U49956-1|AAO38615.1|  669|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z81562-6|CAB04554.1|  211|Caenorhabditis elegans Hypothetical pr...    29   4.4  
Z81116-3|CAB03303.1|  346|Caenorhabditis elegans Hypothetical pr...    28   5.9  
AF003739-7|AAB58068.1|  339|Caenorhabditis elegans Hypothetical ...    28   5.9  
Z77657-7|CAH60768.1|  320|Caenorhabditis elegans Hypothetical pr...    28   7.8  
Z50797-5|CAA90675.1|  342|Caenorhabditis elegans Hypothetical pr...    28   7.8  
AL032639-4|CAA21636.2|  858|Caenorhabditis elegans Hypothetical ...    28   7.8  

>U49956-1|AAO38615.1|  669|Caenorhabditis elegans Hypothetical
           protein M03A1.3 protein.
          Length = 669

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
 Frame = -3

Query: 491 IHYLIRAYNTIYFVITGNI*LTY-YHTYNVHNAKTFVYIYTILHAVYYYCTCCMLTSRIC 315
           +H ++     ++FV TG +   Y    +  H        + I  A  +   CC++TS +C
Sbjct: 438 LHAILMILGWLFFVPTGFLFARYGRQVFKNHTIYGMFVWFQIHRASTFIGVCCIVTSILC 497

Query: 314 IL 309
           IL
Sbjct: 498 IL 499


>Z81562-6|CAB04554.1|  211|Caenorhabditis elegans Hypothetical
           protein K03D7.9 protein.
          Length = 211

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = -3

Query: 512 SSPPEKTIHYLIRAYNTIYFVITGNI*LTYYHTYNV 405
           SSP  + I +++  YN I+F++T    L YYH Y +
Sbjct: 85  SSPTWEDIAFVV--YNFIFFIMTLTSGLFYYHLYQL 118


>Z81116-3|CAB03303.1|  346|Caenorhabditis elegans Hypothetical
           protein T06C12.3 protein.
          Length = 346

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 5/58 (8%)
 Frame = -1

Query: 496 KPFITSYE-LIIQFTLS*QVTS----DLHIIIHITFTTPKHSFISIQYCTRYITIVHA 338
           +PF  +Y   +I F+++  ++S    ++ I + +TF     SFI IQ+  RYI + H+
Sbjct: 62  RPFAHNYNRALILFSINDWISSKSFLEIAISVWMTFYLLIISFIGIQFLYRYICLFHS 119


>AF003739-7|AAB58068.1|  339|Caenorhabditis elegans Hypothetical
           protein M01D7.1 protein.
          Length = 339

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
 Frame = -2

Query: 408 RSQRQNIRLYLYNIARGILLLYMLYVNESNLHSLFY--FRYRKLPKYFASKCIFKIYILH 235
           +S  +  R+Y Y+++R  L  ++ +  +S+     +   +Y KLPK +    IF    L 
Sbjct: 116 KSMEERSRIYNYSLSRFSLDFWIEWFCKSSADKKIFPIIKYTKLPKLWKFLNIFNELFLI 175

Query: 234 VHVHEYVRFNFTVTQFRRRISH 169
            HV   +  +     +R  +SH
Sbjct: 176 DHVDVMIDGDKLFGDYRFLLSH 197


>Z77657-7|CAH60768.1|  320|Caenorhabditis elegans Hypothetical
           protein F08H9.12 protein.
          Length = 320

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 21/95 (22%), Positives = 43/95 (45%)
 Frame = -2

Query: 435 LTYILSYI*RSQRQNIRLYLYNIARGILLLYMLYVNESNLHSLFYFRYRKLPKYFASKCI 256
           L ++ SYI    +Q I + L+ +A    + Y+L +  SN         +KL     SK  
Sbjct: 97  LIFVESYIFHVIQQIIHILLFLLAIANSIKYLLTLKFSNSQIFLLNLVKKLNVVLISKDF 156

Query: 255 FKIYILHVHVHEYVRFNFTVTQFRRRISHYYFFLI 151
             +++ +++  +Y    F+    +  +S+Y   L+
Sbjct: 157 LLLFLCYLNSIQY----FSENNLQSLLSYYMILLL 187


>Z50797-5|CAA90675.1|  342|Caenorhabditis elegans Hypothetical
           protein T22H6.4 protein.
          Length = 342

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 8/32 (25%), Positives = 20/32 (62%)
 Frame = +3

Query: 99  LLDVYLGVIWSCTSSFPQLKKNNNEKFFDEIV 194
           +L +++ V W+ T+ FP L     E+++ +++
Sbjct: 133 VLSIFIFVAWTITTYFPMLPDEMREEYYSDVL 164


>AL032639-4|CAA21636.2|  858|Caenorhabditis elegans Hypothetical
           protein Y38F1A.3 protein.
          Length = 858

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -2

Query: 354 LLLYMLYVNESNLHSLFYFRYRKLPKYF 271
           LL Y+ YV E   H    F+YR LP++F
Sbjct: 535 LLPYLPYVGEQE-HGSIEFKYRYLPEFF 561


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,227,617
Number of Sequences: 27780
Number of extensions: 299416
Number of successful extensions: 776
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 776
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)