Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4442
         (632 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.08 |||COP9 signalosome complex subunit 12 |Schizosacchar...    29   0.42 
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    27   3.0  
SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1 |Sc...    27   3.0  
SPBC4F6.09 |str1||siderophore-iron transporter Str1 |Schizosacch...    26   3.9  
SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr ...    25   9.1  
SPAC7D4.10 |vma13||V-type ATPase subunit H|Schizosaccharomyces p...    25   9.1  

>SPAC1B3.08 |||COP9 signalosome complex subunit 12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 423

 Score = 29.5 bits (63), Expect = 0.42
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = -2

Query: 475 VTEKLRSARLG*YGHVMRRNENEVSKRMLTMNVEGHR 365
           +T  L+S  LG +G  +++NE  ++K  + + +EG R
Sbjct: 307 LTRALKSGNLGEFGKCLQKNETLLAKTKIYLTLEGTR 343


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = -2

Query: 565  VGESMYIYKIIYGSNWIEMIYVRGSLKVALVTEKLRSARLG*YGH 431
            +G  M+ Y + +GS W E     G+     ++   +S+R G  GH
Sbjct: 875  IGADMFRYSLDFGSTWTEWQTYDGNNTYCNLSGWSQSSRYGWKGH 919


>SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 899

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -2

Query: 529 GSNWIEMIYVRGSLKVALVTEKL 461
           G NW+EM+ +  SL VA + E L
Sbjct: 267 GKNWLEMLTIGVSLAVAAIPEGL 289


>SPBC4F6.09 |str1||siderophore-iron transporter Str1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 612

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +1

Query: 265 SILFYHIPFLRSLPSYPYRLSRNPSISS 348
           + + Y I F+ S P+ P+RL R P+I +
Sbjct: 344 AFVLYEI-FVASFPALPFRLMREPTIGA 370


>SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 664

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +2

Query: 248 ATCFLLPYSSIIYHFFAHSPLTHIVFHAIHQFLL 349
           A CFLLP   IIY  F     T +  + IH  ++
Sbjct: 167 AVCFLLPVGVIIYTMFGGIKATFLTDY-IHTVII 199


>SPAC7D4.10 |vma13||V-type ATPase subunit H|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 450

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +2

Query: 50  DILMF*DLYVIKLESDFKRTYLIHFLVSSA*SPCRVYVRLTLYRQW 187
           D L   + Y+  L+ D K  +   F + S+ SPC V    TL+ ++
Sbjct: 121 DFLEKDESYINYLDDDSKLLFARVFALCSSSSPCSVAKAFTLFLEY 166


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,430,545
Number of Sequences: 5004
Number of extensions: 48006
Number of successful extensions: 115
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)