Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4442
         (632 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0398 + 24933894-24933916,24934015-24934555                       32   0.44 
12_02_0056 + 12955832-12956410,12957398-12957499                       29   2.3  
12_01_0442 + 3495333-3496484                                           29   3.1  
01_06_1083 - 34403769-34403774,34403819-34403918,34404235-344043...    28   5.4  
07_01_1085 + 9890369-9892114,9892213-9892731                           28   7.1  
07_01_1076 + 9649003-9650226,9653318-9653743,9653853-9654371           28   7.1  
02_05_1015 + 33512023-33512359,33513550-33514082                       28   7.1  

>04_04_0398 + 24933894-24933916,24934015-24934555
          Length = 187

 Score = 31.9 bits (69), Expect = 0.44
 Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = -2

Query: 352 PKKKLMDCVKDDMGKRGVSEE-MVYDRRVWKE 260
           PKKK   CV+D+ G + ++E+ MV    +W+E
Sbjct: 19  PKKKFRFCVRDEYGTKALAEQVMVKSTSLWRE 50


>12_02_0056 + 12955832-12956410,12957398-12957499
          Length = 226

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -3

Query: 288 WYMIEEYGRRKHVAPTPGDW 229
           W ++ + GRR+HV P  G+W
Sbjct: 25  WIVVLQKGRRRHVVPAFGEW 44


>12_01_0442 + 3495333-3496484
          Length = 383

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
 Frame = +1

Query: 172 SVPAMAHISIQLHHYPALLPVTRGRRNMFSPSILF----YHIPFLRSLPSYPYRLSRNP 336
           ++PAMA +++ + H  A +PV R  R+    ++      + +P  R  P  P   ++NP
Sbjct: 24  ALPAMASLAVLIAHLDAAVPVPRRPRSYLPRAVPMAWWAFRLPVFRPPPPPPPPPAKNP 82


>01_06_1083 -
           34403769-34403774,34403819-34403918,34404235-34404318,
           34404427-34404506,34404614-34404707,34404796-34404887,
           34405335-34405425,34405617-34405719,34405919-34406008,
           34406154-34406235,34406434-34406481,34406601-34406897,
           34406992-34407078,34408047-34408247,34408329-34408533,
           34409362-34410152
          Length = 816

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 18/54 (33%), Positives = 25/54 (46%)
 Frame = +1

Query: 178 PAMAHISIQLHHYPALLPVTRGRRNMFSPSILFYHIPFLRSLPSYPYRLSRNPS 339
           PAMA  ++ L   P  LP  R RR +   ++   H P     PS P   + +PS
Sbjct: 4   PAMAFQALALGPLPLPLPAARRRRRVRVLAVAADHTPPPPPSPSSPPEPANSPS 57


>07_01_1085 + 9890369-9892114,9892213-9892731
          Length = 754

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/17 (70%), Positives = 14/17 (82%)
 Frame = +3

Query: 444 PNRALLSFSVTSATFRL 494
           P+ A+LSFSVT  TFRL
Sbjct: 255 PHAAILSFSVTEETFRL 271


>07_01_1076 + 9649003-9650226,9653318-9653743,9653853-9654371
          Length = 722

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/17 (70%), Positives = 14/17 (82%)
 Frame = +3

Query: 444 PNRALLSFSVTSATFRL 494
           P+ A+LSFSVT  TFRL
Sbjct: 255 PHAAILSFSVTEETFRL 271


>02_05_1015 + 33512023-33512359,33513550-33514082
          Length = 289

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -2

Query: 496 GSLKVALVTEKLRSARLG*YGHVMRRNENEVSKRMLTMN 380
           G++K A V   +RS  +   GH MRR  +E S R+  ++
Sbjct: 178 GAVKGAYVPPSMRSGAVDRVGHDMRRRNDENSVRVTNLS 216


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,244,820
Number of Sequences: 37544
Number of extensions: 291486
Number of successful extensions: 627
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 627
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)