Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4442
         (632 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC087081-13|AAK66033.1|  253|Caenorhabditis elegans Hypothetical...    30   1.6  
U55854-11|AAT81209.1|  570|Caenorhabditis elegans Map kinase pro...    29   2.8  
U55854-9|AAA98016.3|  605|Caenorhabditis elegans Map kinase prot...    29   2.8  
AF003140-5|AAD47120.1|  814|Caenorhabditis elegans Hypothetical ...    28   4.8  
AF003140-4|AAD47119.1| 2712|Caenorhabditis elegans Hypothetical ...    28   4.8  
AF003140-3|AAM15563.1| 2710|Caenorhabditis elegans Hypothetical ...    28   4.8  
Z82271-6|CAB05213.1| 1091|Caenorhabditis elegans Hypothetical pr...    27   8.4  
Z73102-19|CAA97421.1| 1091|Caenorhabditis elegans Hypothetical p...    27   8.4  
Z66523-2|CAA91410.1|  451|Caenorhabditis elegans Hypothetical pr...    27   8.4  

>AC087081-13|AAK66033.1|  253|Caenorhabditis elegans Hypothetical
           protein Y82E9BL.6 protein.
          Length = 253

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 15/46 (32%), Positives = 28/46 (60%)
 Frame = +2

Query: 158 YVRLTLYRQWPIYRSSYIIILLFSQSPGVGATCFLLPYSSIIYHFF 295
           Y+R  +Y  +  Y  + III  F +S  + +TCF++P+S  + +F+
Sbjct: 12  YLRFLVYFIYFTYELNVIII--FKESTFLESTCFIIPFSLGLSYFW 55


>U55854-11|AAT81209.1|  570|Caenorhabditis elegans Map kinase
           protein 2, isoform c protein.
          Length = 570

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +2

Query: 467 LCHKCHFQTSSNIYHLDPVTSVNNLIYVHTLSNGFQWP 580
           L  KC  +  S+   ++P TS  NLI      NG  WP
Sbjct: 444 LHRKCSEENYSSDSGMEPSTSNANLIVQEIFKNGINWP 481


>U55854-9|AAA98016.3|  605|Caenorhabditis elegans Map kinase protein
           2, isoform a protein.
          Length = 605

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +2

Query: 467 LCHKCHFQTSSNIYHLDPVTSVNNLIYVHTLSNGFQWP 580
           L  KC  +  S+   ++P TS  NLI      NG  WP
Sbjct: 479 LHRKCSEENYSSDSGMEPSTSNANLIVQEIFKNGINWP 516


>AF003140-5|AAD47120.1|  814|Caenorhabditis elegans Hypothetical
           protein C44E4.1b protein.
          Length = 814

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
 Frame = -2

Query: 394 MLTMNVEGHRGRGR-----PKKKLMDCVKDDMGKRGVSEEMVYDRRVWKEKTCCADP 239
           +LT NV+   G  R      +K     VK  +G++ + +  + +R +   +TCCADP
Sbjct: 159 LLTTNVDSSSGSSRFLLCYLRKIFERIVKIPIGRKILVQRRMVERMMSVIRTCCADP 215


>AF003140-4|AAD47119.1| 2712|Caenorhabditis elegans Hypothetical
            protein C44E4.1a protein.
          Length = 2712

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
 Frame = -2

Query: 394  MLTMNVEGHRGRGR-----PKKKLMDCVKDDMGKRGVSEEMVYDRRVWKEKTCCADP 239
            +LT NV+   G  R      +K     VK  +G++ + +  + +R +   +TCCADP
Sbjct: 2057 LLTTNVDSSSGSSRFLLCYLRKIFERIVKIPIGRKILVQRRMVERMMSVIRTCCADP 2113


>AF003140-3|AAM15563.1| 2710|Caenorhabditis elegans Hypothetical
            protein C44E4.1c protein.
          Length = 2710

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
 Frame = -2

Query: 394  MLTMNVEGHRGRGRP---KKKLMDCVKDDMGKRGVSEEMVYDRRVWKEKTCCADP 239
            +LT NV+   GR      +K     VK  +G++ + +  + +R +   +TCCADP
Sbjct: 2057 LLTTNVDSSSGRFLLCYLRKIFERIVKIPIGRKILVQRRMVERMMSVIRTCCADP 2111


>Z82271-6|CAB05213.1| 1091|Caenorhabditis elegans Hypothetical protein
            F54E12.2 protein.
          Length = 1091

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = +2

Query: 524  TSVNNLIYVHTLSNGFQWP*RT-KYLLKD*HER 619
            TSV NLI +H  S+GF++   T + L+KD  ER
Sbjct: 943  TSVLNLIEIHIKSSGFKYTSITGQVLVKDRQER 975


>Z73102-19|CAA97421.1| 1091|Caenorhabditis elegans Hypothetical
            protein F54E12.2 protein.
          Length = 1091

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = +2

Query: 524  TSVNNLIYVHTLSNGFQWP*RT-KYLLKD*HER 619
            TSV NLI +H  S+GF++   T + L+KD  ER
Sbjct: 943  TSVLNLIEIHIKSSGFKYTSITGQVLVKDRQER 975


>Z66523-2|CAA91410.1|  451|Caenorhabditis elegans Hypothetical
           protein M05D6.2 protein.
          Length = 451

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 257 FLLPYSSIIYHFFAHSPLTHIVFHA 331
           F   YS++I  F  H+P TH ++ A
Sbjct: 414 FYAMYSNLIQEFQGHTPSTHAIYRA 438


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,238,845
Number of Sequences: 27780
Number of extensions: 257981
Number of successful extensions: 587
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 587
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)