Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4442
         (632 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    25   0.46 
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    23   3.3  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    23   3.3  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   5.7  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 25.4 bits (53), Expect = 0.46
 Identities = 17/63 (26%), Positives = 28/63 (44%)
 Frame = +1

Query: 133 VSLIAVSSLCEADSVPAMAHISIQLHHYPALLPVTRGRRNMFSPSILFYHIPFLRSLPSY 312
           V  + VS     D  PA    +   +H P +      R + FS   +  H+ FLR++P Y
Sbjct: 96  VYAVVVSHPLTGDLSPAAVSYTSGFYHIPVI--GISSRDSAFSDKNI--HVSFLRTVPPY 151

Query: 313 PYR 321
            ++
Sbjct: 152 SHQ 154


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 167 LTLYRQWPIYRSSYIIILL 223
           LT+Y  +P+Y  S II  L
Sbjct: 204 LTIYADFPLYELSTIIFFL 222


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +1

Query: 130 IVSLIAVSSLCEADSVPAMAHISIQLHH 213
           ++SL    S+C      A+A +++ LHH
Sbjct: 274 LISLYYGVSICLVTFASALAVVTLNLHH 301


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -2

Query: 433 HVMRRNENEVSKRMLTM 383
           HV+R NEN  S ++++M
Sbjct: 623 HVLRGNENIYSGKLISM 639


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,017
Number of Sequences: 438
Number of extensions: 3286
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)