Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4441
         (570 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC688.06c |slx4||structure-specific endonuclease subunit |Schi...    32   0.051
SPAC25H1.04 |mug105||DUF1671 family protein|Schizosaccharomyces ...    27   2.6  
SPAC14C4.06c |||poly|Schizosaccharomyces pombe|chr 1|||Manual          26   4.5  
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    25   5.9  

>SPAC688.06c |slx4||structure-specific endonuclease subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 419

 Score = 32.3 bits (70), Expect = 0.051
 Identities = 18/56 (32%), Positives = 22/56 (39%)
 Frame = -2

Query: 281 HCDAGYSIQVECAAVGFQRSTSTTQMHKLLVKTVEFTITSINSMIH*ILEFTGY*D 114
           H  AG+SI   C +  F    S T   K      EFT    N     +L + GY D
Sbjct: 213 HPSAGHSIDSTCQSNSFLEGDSATHKKKKTDNIKEFTSCEFNDRSRTLLNYAGYMD 268


>SPAC25H1.04 |mug105||DUF1671 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 244

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +1

Query: 424 FINLLNWFGHCYIRHQVKLLYSIFRL 501
           F+N+ + F HCY+R +  L +S F+L
Sbjct: 194 FVNIAD-FNHCYMRKKRSLKFSQFQL 218


>SPAC14C4.06c |||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 307

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 309 PACRDRYPTKYRNATHGSPHR 371
           PACR  +PTK RN T   P +
Sbjct: 262 PACRFIHPTKSRNMTWRPPSK 282


>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +2

Query: 389 RPYRAVCIPVSSLSIY*IGLGIAILDTRSNFCILFFG*K 505
           +P++ + + ++SLS+  I LG  +L T    C+L    K
Sbjct: 104 QPFQLLNVIIASLSMVFITLGAFVLGTLDTTCLLLLAFK 142


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,336,895
Number of Sequences: 5004
Number of extensions: 47231
Number of successful extensions: 122
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)