Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4441
         (570 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     23   1.6  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    23   2.8  
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          21   8.6  
L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          21   8.6  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    21   8.6  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   8.6  

>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +3

Query: 78  WQRKGILKSPWYVS 119
           W RKG L++ W +S
Sbjct: 157 WSRKGFLRTRWSIS 170


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -2

Query: 437 NKLIKSSQECRQHDKGVHSRNS 372
           NK++ S    R+H + VH+R S
Sbjct: 9   NKILTSLTRLRRHIQNVHTRPS 30


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +3

Query: 63  LITFWWQRKGIL 98
           L++ WW  KGI+
Sbjct: 67  LLSVWWDYKGIV 78


>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = +3

Query: 63  LITFWWQRKGIL 98
           L+  WW  KGI+
Sbjct: 68  LLLVWWDHKGIV 79


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +3

Query: 63  LITFWWQRKGIL 98
           L++ WW  KGI+
Sbjct: 189 LLSVWWDYKGIV 200


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = -1

Query: 480 KFDLVSNIAMPKP 442
           +FD++ NI +P+P
Sbjct: 643 QFDIIQNIYIPEP 655


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,612
Number of Sequences: 438
Number of extensions: 3119
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16381902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)