Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4440
         (718 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma...    31   0.22 
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    29   0.50 
SPAC9E9.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    29   0.66 
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    27   2.0  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   3.5  
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    27   3.5  
SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr ...    26   4.7  
SPAC1A6.03c |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    26   4.7  
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom...    25   8.2  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    25   8.2  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    25   8.2  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   8.2  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    25   8.2  

>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 358

 Score = 30.7 bits (66), Expect = 0.22
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
 Frame = +1

Query: 103 SSPISLTA*TPVTHRPPP----LTPRSQPRTPPAPSTRDTPAPLKLSSNITL 246
           +S IS ++ TP+T   P     L+  + P T P P+T  TP    + SN T+
Sbjct: 88  NSTISTSSSTPITASVPTSSSILSNSTIPTTSPVPTTSSTPTSSSILSNSTI 139


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 29.5 bits (63), Expect = 0.50
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = +1

Query: 148 PPPLTPRSQPRTPPAPSTRDT 210
           PPP TP   PR P   STR T
Sbjct: 274 PPPATPSQPPRPPTNASTRST 294


>SPAC9E9.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 313

 Score = 29.1 bits (62), Expect = 0.66
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = +1

Query: 151 PPLTPRSQPRTPPAPSTRDTPAPLKLSSNITL 246
           P L P S P  PP  S   +P PL L S  +L
Sbjct: 123 PELPPSSSPLLPPNGSESSSPIPLSLLSTSSL 154


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1562

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 145 RPPPLTPRSQPRTPPAPSTRDTPAPLKLSSNI 240
           R P  T    P+ PP+PS+  +PA L +  NI
Sbjct: 362 REPERTSEDPPQLPPSPSSPSSPA-LSVKPNI 392


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = +1

Query: 97   EPSSPISLTA*TPVTHRPPPLTPRSQPRTPPAPSTRDT--PAPLKLSS 234
            + ++P  ++A TP    PPP++    P  PP P+   +  P PL  SS
Sbjct: 1695 QSAAPPQMSAPTPP---PPPMSVPPPPSAPPMPAGPPSAPPPPLPASS 1739


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 15/27 (55%), Positives = 15/27 (55%), Gaps = 3/27 (11%)
 Frame = +1

Query: 130 TP-VTHRPPPLTPRSQ--PRTPPAPST 201
           TP V H PPP   RS   P  PPAP T
Sbjct: 737 TPAVKHHPPPPPVRSSISPSMPPAPLT 763


>SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 495

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +1

Query: 133 PVTHRPPPLTPRSQPRTPPAPSTRDTPAPLKLSS 234
           P+T  PPP+   S+  T   P+  +T A + LS+
Sbjct: 340 PITSNPPPMLNLSKGSTSVEPTFCETNASVALST 373


>SPAC1A6.03c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 624

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -3

Query: 227 SFSGAGVSLVDGAGGVLGCDRGVNGGGLCVTGV 129
           +FSG G+  +   GGVL      NG G  + G+
Sbjct: 99  AFSGGGLRAMVHGGGVLNAFDSRNGNGSSLAGI 131


>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 204

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +1

Query: 109 PISLTA*TPVTHRPPPLTPRSQPRTPPAPSTRDTPAPLKLSS 234
           P S+    P +  PP  +  + P TP A ++   PAP   +S
Sbjct: 50  PPSVDHSAPPSGPPPSYSNSAAPATPAASASSAAPAPAPAAS 91


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
 Frame = +1

Query: 130 TPVTHRPPPLTPRSQPRTPP-APSTRDTPAP 219
           TP    PP L P + P  PP AP +    AP
Sbjct: 414 TPPVPTPPSLPPSAPPSLPPSAPPSLPMGAP 444



 Score = 25.4 bits (53), Expect = 8.2
 Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
 Frame = +1

Query: 100 PSSPIS--LTA*TPVTHRPPPLTPRSQPRTPPAPS 198
           PS+PI+  L A  P     PP  P   P   PAP+
Sbjct: 451 PSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPA 485


>SPAC29B12.07 |sec16||multidomain vesicle coat component
           Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 145 RPPPLTPRSQPRTPPAPSTRDTPAPLKLSSN 237
           +P P TP + PR+ P PS +   AP+  + N
Sbjct: 632 QPRPATPSNPPRSLPPPSGQ-VNAPMSQTPN 661


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = +1

Query: 130 TPVTHRPPPLTPRSQPRTPPAPSTRDT 210
           TPVT   PP +  S    PP  ST  T
Sbjct: 299 TPVTPTVPPTSTSSTSTPPPPASTSST 325



 Score = 25.4 bits (53), Expect = 8.2
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = +1

Query: 130 TPVTHRPPPLTPRSQPRTPPAPSTRDT 210
           TPVT   PP +  S    PP  ST  T
Sbjct: 353 TPVTPTVPPTSTSSTSTPPPPASTSST 379


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +1

Query: 148 PPPLTPRSQPRTPPAPSTRDTPAPLKLSSNIT 243
           PP  +  + PR  P PS   T     ++S++T
Sbjct: 255 PPASSASTSPRNTPTPSNNGTSINANVTSSLT 286


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,962,578
Number of Sequences: 5004
Number of extensions: 31859
Number of successful extensions: 146
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)