Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4439
         (511 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual       27   1.6  
SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1...    25   6.6  
SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr 2...    25   8.7  
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei...    25   8.7  

>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 706

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 25/68 (36%), Positives = 28/68 (41%), Gaps = 4/68 (5%)
 Frame = -2

Query: 207 RAPSEHYRPGTAEERNSAL----AFHRSNVRARLRPPTCRYAARSPPQPSHSYEDHGGLE 40
           RAP E  R   A  R S        HRS  R+R R P    + R   +PS S E H   E
Sbjct: 171 RAPYEESRLSRAPSRASRYDDDDRDHRSRRRSRSRRPGRSRSRRRSRRPSPSAE-HNSAE 229

Query: 39  EAGQMLSR 16
           E    L R
Sbjct: 230 ENDPELQR 237


>SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +1

Query: 286 PADFVVHQSINKRP-TGDTSKEKRNCYFYLIPSIFI 390
           P+D V+H  +N  P TGD +++    Y  LI    I
Sbjct: 270 PSDTVLHPDLNGSPDTGDATQKPNLSYANLIARTLI 305


>SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 479

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +3

Query: 159 SYVPQQCQVYSARTERDVIRITCWSWGRNP 248
           S   ++  V+SA T RD++R+   +  +NP
Sbjct: 57  SLARRRSNVFSATTPRDILRMLSRALAKNP 86


>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 945

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 463 AGPIWLILVLNYLWKSRE 410
           +GPIW +   N  W+SRE
Sbjct: 917 SGPIWQLKKENNYWESRE 934


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,261,993
Number of Sequences: 5004
Number of extensions: 45724
Number of successful extensions: 111
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)