Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-4439
(511 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0460 - 17955102-17955146,17955253-17955310,17955442-179555... 31 0.54
06_03_0858 + 25448807-25448815,25451253-25452038,25452956-25452991 31 0.54
07_03_1611 - 28136398-28136572,28137995-28138567,28138762-28139123 31 0.71
02_01_0191 - 1289442-1289875,1290073-1290154,1291046-1291090,129... 31 0.71
04_04_1561 - 34435565-34436530,34437373-34437473,34438099-34438243 29 2.2
02_05_1027 - 33602170-33602622,33602912-33603013 29 2.2
06_01_0883 + 6768998-6769381,6769518-6769616,6769664-6769726,677... 28 3.8
05_06_0179 + 26170582-26170789,26171306-26171604 28 3.8
03_06_0323 + 33121062-33121653,33121748-33121839,33122482-331225... 28 3.8
10_08_0004 + 14022511-14022670,14022740-14023049,14023193-140234... 28 5.0
05_01_0125 - 853691-853984,854027-854659 28 5.0
05_04_0235 + 19291204-19291769,19291860-19292250 27 8.8
03_04_0214 + 18688480-18688832,18688956-18688999,18689039-186891... 27 8.8
03_01_0366 - 2848449-2849032,2849155-2849233,2849346-2849608,284... 27 8.8
02_04_0275 - 21469391-21470650 27 8.8
>11_04_0460 -
17955102-17955146,17955253-17955310,17955442-17955593,
17955888-17955993,17956101-17956222,17956766-17956834,
17956969-17957214,17957331-17957373,17957449-17957520,
17957954-17958066,17958158-17958238,17958343-17958415,
17959413-17959519,17960410-17960514,17960684-17960974,
17961621-17961707,17961774-17961842,17961917-17961973,
17962057-17962155,17962223-17962312,17962395-17962511,
17964164-17964244,17964353-17964502,17964812-17964956,
17967359-17967510,17967647-17967784,17967838-17967914,
17968032-17968134
Length = 1015
Score = 31.1 bits (67), Expect = 0.54
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = -2
Query: 156 ALAFHRSNVRARLRPPTCRYAARS 85
A AF + ++ +RPPTCRYA RS
Sbjct: 443 AFAFIVATLKDPMRPPTCRYALRS 466
>06_03_0858 + 25448807-25448815,25451253-25452038,25452956-25452991
Length = 276
Score = 31.1 bits (67), Expect = 0.54
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Frame = -2
Query: 264 RRCKNLDSAPNSN-MLSV*HRAPSEHYR--PGTAEE--RNSALAFHRSNVRARLRPPTCR 100
R NL +AP+S S HR H++ PG+ + R+ ++A + +++ PP
Sbjct: 56 RAADNLAAAPSSRPATSSGHRESQRHHQQPPGSHQHHRRSGSVASDPGDFQSKFAPPPQF 115
Query: 99 YAARSPPQPSHSYEDH 52
+ SP Q H DH
Sbjct: 116 RPSPSPSQYDHHSSDH 131
>07_03_1611 - 28136398-28136572,28137995-28138567,28138762-28139123
Length = 369
Score = 30.7 bits (66), Expect = 0.71
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = -1
Query: 160 LCACVPSKQCQSSTQTTDLSLCSSVAPTTQSQLRGPWWTGRSWANA*PM 14
LCAC P ++T T + +S AP T S W + +N+ P+
Sbjct: 45 LCACSPPTTTHTTTTVTTTTTTASPAPVTTSPADVAWLKSQLASNSLPL 93
>02_01_0191 -
1289442-1289875,1290073-1290154,1291046-1291090,
1291274-1291357,1291428-1291631,1291735-1291894,
1292042-1292292
Length = 419
Score = 30.7 bits (66), Expect = 0.71
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = -2
Query: 159 SALAFHRSNVRARLRPPTCRYAARSPPQPSHSYEDHGGLEEAGQM 25
+ L F R+ + AR+R P +Y + P P ED L + +M
Sbjct: 44 ATLEFWRTQLPARIRAPLAQYVGAAGPAPPPQQEDDSSLLGSSEM 88
>04_04_1561 - 34435565-34436530,34437373-34437473,34438099-34438243
Length = 403
Score = 29.1 bits (62), Expect = 2.2
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +3
Query: 339 IKGKTKLLFLFNSEHFHIYLPFKPSLDFHK*FKTKISQIGPAVLEGGPGT 488
IK K L+ +F ++ +H LPF S K + + + P GGPG+
Sbjct: 74 IKMKALLVGMFLTDKYHALLPFHASGGGVKDHRRRPGKAVPGAAGGGPGS 123
>02_05_1027 - 33602170-33602622,33602912-33603013
Length = 184
Score = 29.1 bits (62), Expect = 2.2
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = -2
Query: 114 PPTCRYAARSPPQPS-HSYEDHGGLE 40
PPT Y +R+P Q S H +E HG L+
Sbjct: 124 PPTVEYYSRNPHQNSHHDHEQHGVLK 149
>06_01_0883 +
6768998-6769381,6769518-6769616,6769664-6769726,
6770883-6770931,6771338-6771405,6771463-6771715,
6772244-6772380,6772708-6772821,6773059-6773258,
6773367-6773561,6773650-6773812
Length = 574
Score = 28.3 bits (60), Expect = 3.8
Identities = 16/27 (59%), Positives = 17/27 (62%)
Frame = +2
Query: 83 GDRAA*RQVGGLSRALTLLRWNASAEL 163
G AA R GG S L LLRW +SAEL
Sbjct: 12 GAAAAVRWRGGESLLLLLLRWPSSAEL 38
>05_06_0179 + 26170582-26170789,26171306-26171604
Length = 168
Score = 28.3 bits (60), Expect = 3.8
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +3
Query: 288 GRLRSASIDK*KTDGGHIKGKTKLLFLFNSEHFHIYLPFKPS 413
G R ASI GG+ + +T L F S+ +Y+P PS
Sbjct: 80 GHRRVASIRGVAGSGGYFRIETSQLTSFTSQECRVYVPRSPS 121
>03_06_0323 +
33121062-33121653,33121748-33121839,33122482-33122565,
33123126-33123203,33123500-33123700,33123821-33123928,
33124145-33124219,33124338-33124537,33124654-33124722,
33125159-33125279,33126840-33127120,33127522-33127594
Length = 657
Score = 28.3 bits (60), Expect = 3.8
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 7/69 (10%)
Frame = -2
Query: 237 PNSNMLSV*HRAPSEHY--RPGTAEERNSALAFHRSNV-----RARLRPPTCRYAARSPP 79
P+S+ + HRA + H RP A R+NV RAR PP + A +
Sbjct: 10 PSSHAAACAHRAAAAHRDARPALRLPELHATRRRRNNVACRATRAREAPPQQQNTAAALS 69
Query: 78 QPSHSYEDH 52
+ +H Y DH
Sbjct: 70 KEAHKYFDH 78
>10_08_0004 +
14022511-14022670,14022740-14023049,14023193-14023414,
14023497-14023721,14024045-14024119,14024619-14024754,
14025124-14025251,14025337-14025419,14025505-14025626,
14025732-14025810,14026252-14026420,14026562-14026622,
14026729-14026851,14027675-14027914,14028045-14028113,
14028353-14028429,14028527-14028593
Length = 781
Score = 27.9 bits (59), Expect = 5.0
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -2
Query: 99 YAARSPPQPSHSYEDHGGLEEAGQMLSRCRS 7
Y A PPQP + D G ++AG C+S
Sbjct: 172 YVAEEPPQPKPEFND-SGYKKAGSSEKDCKS 201
>05_01_0125 - 853691-853984,854027-854659
Length = 308
Score = 27.9 bits (59), Expect = 5.0
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = -2
Query: 114 PPTCRYAARSPPQPSHSYEDH 52
PP + RSPP PS S DH
Sbjct: 8 PPDAKRLRRSPPSPSSSSPDH 28
>05_04_0235 + 19291204-19291769,19291860-19292250
Length = 318
Score = 27.1 bits (57), Expect = 8.8
Identities = 11/21 (52%), Positives = 16/21 (76%), Gaps = 2/21 (9%)
Frame = +1
Query: 85 RPSC--ITTGRWSESSSDIAS 141
+PSC + TG+W+ SS DIA+
Sbjct: 233 KPSCHDVITGQWTPSSGDIAA 253
>03_04_0214 +
18688480-18688832,18688956-18688999,18689039-18689101,
18689883-18689956,18691526-18692017
Length = 341
Score = 27.1 bits (57), Expect = 8.8
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = -3
Query: 239 PPTPTCYPYNIALRPSTIDLALLRNVTLRLRSIEAM 132
P PT + I+ P+T L ++ V +R S+E +
Sbjct: 202 PLVPTIKTFQISTNPTTEGLGIISEVPIRYNSVEVI 237
>03_01_0366 -
2848449-2849032,2849155-2849233,2849346-2849608,
2849742-2849862
Length = 348
Score = 27.1 bits (57), Expect = 8.8
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -3
Query: 290 AGSASHK*IDGVRTWIPPPTPTCYPYNIALRPS 192
AG H + V T+ PPP+ YPY + + P+
Sbjct: 301 AGGYYHPHPNDVPTYQPPPSYPPYPYQLDMSPA 333
>02_04_0275 - 21469391-21470650
Length = 419
Score = 27.1 bits (57), Expect = 8.8
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = -2
Query: 138 SNVRARLRPPTCRYAARSPPQPSHSYEDHGGLEEA 34
SN R R R+ +P QP H Y ++ E A
Sbjct: 359 SNHHVRYRFQDSRHCHAAPQQPQHQYNENNAAEAA 393
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,130,064
Number of Sequences: 37544
Number of extensions: 342910
Number of successful extensions: 1177
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1176
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1095026320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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