Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4439
         (511 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M17214-2|AAA28508.1|  858|Drosophila melanogaster protein ( D.me...    46   4e-05
AY180919-1|AAN87272.1|  884|Drosophila melanogaster ORF1 protein.      41   0.001
AF456125-1|AAL57609.1|  832|Drosophila melanogaster reverse tran...    41   0.001
AY060438-1|AAL25477.1|  906|Drosophila melanogaster LD46618p pro...    40   0.003
AF237761-2|AAF81411.1|  908|Drosophila melanogaster unknown prot...    40   0.003
M22874-2|AAA28675.1|  916|Drosophila melanogaster protein ( D.me...    36   0.024
AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein ...    34   0.097
U02279-1|AAA18301.1|  964|Drosophila melanogaster protein ( Dros...    33   0.17 
AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein ...    33   0.17 
AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein ...    33   0.17 
AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein ...    33   0.17 
U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative rever...    33   0.30 
AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein ...    33   0.30 
AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein ...    29   2.8  
AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein ...    29   2.8  
AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein ...    29   2.8  
AE013599-3180|AAM70866.1|  189|Drosophila melanogaster CG30386-P...    28   8.4  

>M17214-2|AAA28508.1|  858|Drosophila melanogaster protein (
           D.melanogaster Fw repetitiveelement putative reverse
           transcriptase, complete cds,and putative binding
           protein, 3' end. ).
          Length = 858

 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
 Frame = -3

Query: 245 IPPPTPTCYPYNIALRPSTIDLALLRNVTLRLRSIEAMSELDSDHRPVVMQLGR-PHN-- 75
           + P +PT +P ++   P  ID A+ +N++  L   E + +L SDH PV++ L R   N  
Sbjct: 171 VSPGSPTYWPSDLNKLPDLIDFAVTKNISRSLVKAECLPDLSSDHSPVLIHLRRYAENVK 230

Query: 74  -PVTATRTMVDWKKLGKCLA 18
            P   T +  +W +  K ++
Sbjct: 231 PPTRLTSSKTNWLRYKKYIS 250


>AY180919-1|AAN87272.1|  884|Drosophila melanogaster ORF1 protein.
          Length = 884

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 21/49 (42%), Positives = 29/49 (59%)
 Frame = -3

Query: 239 PPTPTCYPYNIALRPSTIDLALLRNVTLRLRSIEAMSELDSDHRPVVMQ 93
           P  PT  P+N   + ST+DL L  N+  +L +   M EL SDH PVV++
Sbjct: 195 PTQPTYIPHNHKAKASTLDLCLT-NIPNQLANPAVMQELSSDHLPVVIK 242


>AF456125-1|AAL57609.1|  832|Drosophila melanogaster reverse
           transcriptase protein.
          Length = 832

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 21/49 (42%), Positives = 29/49 (59%)
 Frame = -3

Query: 239 PPTPTCYPYNIALRPSTIDLALLRNVTLRLRSIEAMSELDSDHRPVVMQ 93
           P  PT  P+N   + ST+DL L  N+  +L +   M EL SDH PVV++
Sbjct: 143 PTQPTYIPHNHKAKASTLDLCLT-NIPNQLANPAVMQELSSDHLPVVIK 190


>AY060438-1|AAL25477.1|  906|Drosophila melanogaster LD46618p
           protein.
          Length = 906

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 18/48 (37%), Positives = 28/48 (58%)
 Frame = -3

Query: 233 TPTCYPYNIALRPSTIDLALLRNVTLRLRSIEAMSELDSDHRPVVMQL 90
           +PT YPY  +  PS ID A+   +   L +I    +LDSDH P+++ +
Sbjct: 174 SPTRYPYVPSHTPSCIDFAVYHGIPDHLATITQSWDLDSDHLPLIISI 221


>AF237761-2|AAF81411.1|  908|Drosophila melanogaster unknown
           protein.
          Length = 908

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 21/47 (44%), Positives = 26/47 (55%)
 Frame = -3

Query: 230 PTCYPYNIALRPSTIDLALLRNVTLRLRSIEAMSELDSDHRPVVMQL 90
           PT YPY     P  ID AL + V     +I A+ EL SDH P+V+ L
Sbjct: 174 PTRYPYGCRGSPGYIDFALTKGVLGIHANISAVVELSSDHLPLVITL 220


>M22874-2|AAA28675.1|  916|Drosophila melanogaster protein (
           D.melanogaster LINEelement J-1, clone J-1. ).
          Length = 916

 Score = 36.3 bits (80), Expect = 0.024
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = -3

Query: 230 PTCYPYNIALRPSTIDLALLRNVTLRLRSIEAMSELDSDHRPVVMQL 90
           PT Y YN  L PS +D  +     +    ++ + EL SDH P++  L
Sbjct: 175 PTFYSYNPLLTPSALDFFITCGYGMGRLDVQTLQELSSDHLPILAVL 221


>AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein
           protein.
          Length = 1080

 Score = 34.3 bits (75), Expect = 0.097
 Identities = 12/46 (26%), Positives = 29/46 (63%)
 Frame = -3

Query: 227 TCYPYNIALRPSTIDLALLRNVTLRLRSIEAMSELDSDHRPVVMQL 90
           T +P++    PS ID ++ + +    + I ++++L SDH P+++++
Sbjct: 192 THFPHDTRKNPSAIDFSICKGLGRLEKRISSVADLSSDHLPILLEI 237


>U02279-1|AAA18301.1|  964|Drosophila melanogaster protein (
           Drosophila melanogastertelomere-associated transposons
           TART, TART-A and HeT-A,and TART-A ORF2 gene, partial
           cds. ).
          Length = 964

 Score = 33.5 bits (73), Expect = 0.17
 Identities = 12/46 (26%), Positives = 28/46 (60%)
 Frame = -3

Query: 227 TCYPYNIALRPSTIDLALLRNVTLRLRSIEAMSELDSDHRPVVMQL 90
           T +P++    PS ID ++ + +    + I + ++L SDH P+++++
Sbjct: 76  THFPHDTRKNPSAIDFSICKGLGRLEKRISSSADLSSDHLPILLEI 121


>AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein
           protein.
          Length = 1080

 Score = 33.5 bits (73), Expect = 0.17
 Identities = 12/46 (26%), Positives = 28/46 (60%)
 Frame = -3

Query: 227 TCYPYNIALRPSTIDLALLRNVTLRLRSIEAMSELDSDHRPVVMQL 90
           T +P++    PS ID ++ + +    + I + ++L SDH P+++++
Sbjct: 192 THFPHDTRKNPSAIDFSICKGLGRLEKRISSSADLSSDHLPILLEI 237


>AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein
           protein.
          Length = 1042

 Score = 33.5 bits (73), Expect = 0.17
 Identities = 12/46 (26%), Positives = 28/46 (60%)
 Frame = -3

Query: 227 TCYPYNIALRPSTIDLALLRNVTLRLRSIEAMSELDSDHRPVVMQL 90
           T +P++    PS ID ++ + +    + I + ++L SDH P+++++
Sbjct: 154 THFPHDTRKNPSAIDFSICKGLGRLEKRISSSADLSSDHLPILLEI 199


>AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein
           protein.
          Length = 1080

 Score = 33.5 bits (73), Expect = 0.17
 Identities = 12/46 (26%), Positives = 28/46 (60%)
 Frame = -3

Query: 227 TCYPYNIALRPSTIDLALLRNVTLRLRSIEAMSELDSDHRPVVMQL 90
           T +P++    PS ID ++ + +    + I + ++L SDH P+++++
Sbjct: 192 THFPHDTRKNPSAIDFSICKGLGRLEKRISSSADLSSDHLPILLEI 237


>U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative reverse
           transcriptase protein.
          Length = 1084

 Score = 32.7 bits (71), Expect = 0.30
 Identities = 13/51 (25%), Positives = 29/51 (56%)
 Frame = -3

Query: 227 TCYPYNIALRPSTIDLALLRNVTLRLRSIEAMSELDSDHRPVVMQLGRPHN 75
           T +P++    PS ID ++ + +    + I + ++L SDH P+++++    N
Sbjct: 192 THFPHDTRKNPSAIDFSICKGLGRFEKRISSGADLSSDHLPILLEINLDTN 242


>AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein
           protein.
          Length = 1092

 Score = 32.7 bits (71), Expect = 0.30
 Identities = 13/58 (22%), Positives = 31/58 (53%)
 Frame = -3

Query: 263 DGVRTWIPPPTPTCYPYNIALRPSTIDLALLRNVTLRLRSIEAMSELDSDHRPVVMQL 90
           D +   +   + T +P++    PS ID ++ + +    + I + + L SDH P+++++
Sbjct: 192 DSMAEIVATGSATHFPHDTRKSPSAIDFSICKRLGRYEKRISSSAHLSSDHLPILLEI 249


>AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein
           protein.
          Length = 1103

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = -3

Query: 227 TCYPYNIALRPSTIDLALLRNVTLRLRSIEAMSELDSDHRPVVMQL 90
           T +P++   +PS +D A+ +    +     +  EL SDH P+ + L
Sbjct: 196 THFPFDKKKQPSALDFAICKGFHTQKLKTYSTDELSSDHLPIQIVL 241


>AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein
           protein.
          Length = 1103

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = -3

Query: 227 TCYPYNIALRPSTIDLALLRNVTLRLRSIEAMSELDSDHRPVVMQL 90
           T +P++   +PS +D A+ +    +     +  EL SDH P+ + L
Sbjct: 196 THFPFDKKKQPSALDFAICKGFHTQKLKTYSTDELSSDHLPIQIVL 241


>AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein
           protein.
          Length = 1103

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = -3

Query: 227 TCYPYNIALRPSTIDLALLRNVTLRLRSIEAMSELDSDHRPVVMQL 90
           T +P++   +PS +D A+ +    +     +  EL SDH P+ + L
Sbjct: 196 THFPFDKKKQPSALDFAICKGFHTQKLKTYSTDELSSDHLPIQIVL 241


>AE013599-3180|AAM70866.1|  189|Drosophila melanogaster CG30386-PA
           protein.
          Length = 189

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = -2

Query: 225 MLSV*HRAPSEHYRP-GTAEERNSALAFHRSNVRARLRPPTCRYAARSPPQPSHSYEDH 52
           +++V HR P + +R  GT  + +S+L     N+             +S P P+  +E+H
Sbjct: 73  IVAVNHRNPRQPHRSYGTERKPHSSLPRFVINIEEETDAAVAAAEGKSSPAPNQEHEEH 131


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,055,555
Number of Sequences: 53049
Number of extensions: 551077
Number of successful extensions: 1498
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1495
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1846255872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)