Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4439
         (511 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    26   0.20 
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    25   0.34 
L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          23   1.4  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    23   1.8  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   2.4  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    22   3.2  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   3.2  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   9.8  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 26.2 bits (55), Expect = 0.20
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = -3

Query: 215 YNIALRPSTIDLALLRNVTLRLRSIEAMSELDSDH 111
           Y+I LRP+     LL  + L + S +A+SE++ D+
Sbjct: 48  YDIRLRPNFGGEPLLVGMDLTIASFDAISEVNMDY 82


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 25.4 bits (53), Expect = 0.34
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +1

Query: 34  SFFQSTMVLVAVTGLWGRPSCITTGRWSESSSDIASMERKRRVTFLSSARSI 189
           SFF   +V++ V   +GR SC+   R     +  +   R RR   +  A+SI
Sbjct: 206 SFFLPMLVMLYV---YGRISCVIASRHRNLEATESENVRPRRNVLIERAKSI 254


>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +3

Query: 3   WWSGIG*AFAQLLPVHHGPRSCDWVVGATELHN 101
           WW   G  + +LLP +    S  ++   T+L+N
Sbjct: 72  WWDHKGIVYFELLPPNRTINSVVYIEHLTKLNN 104


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +3

Query: 3   WWSGIG*AFAQLLPVHHGPRSCDWVVGATELHN 101
           WW   G  + +LLP +    S  ++   T+L+N
Sbjct: 193 WWDYKGIVYFELLPPNRTINSVVYIEQLTKLNN 225


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
            receptor protein.
          Length = 1040

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = -3

Query: 149  RSIEAMSELDSDHRPVVMQLGRPHNPVTATRTMVDWKKLG 30
            RS +  +  D D   VV Q     + +TAT+ + +  ++G
Sbjct: 990  RSTQTSANNDKDTNAVVTQSKEARDNITATKQLNNKARIG 1029


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = -2

Query: 111 PTCRYAARS-PPQPSHSYEDHGGLEEA 34
           P   Y  R+ PPQP  + +D G + E+
Sbjct: 243 PERHYERRATPPQPDRTSKDQGTIGES 269


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 10/25 (40%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
 Frame = +3

Query: 147 TQAQS-YVPQQCQVYSARTERDVIR 218
           T A+S ++P++ ++YS  T +DV R
Sbjct: 661 TPAESTFIPEERRIYSPITFQDVAR 685


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +3

Query: 381  HFHIYLPFKPSLD 419
            + H+Y P K SLD
Sbjct: 998  NLHVYAPLKISLD 1010


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,528
Number of Sequences: 438
Number of extensions: 3072
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14109465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)