Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4435
         (778 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch...    29   0.74 
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c...    28   1.3  
SPBC1773.07c |sbp1|yrb1|Ran GTPase binding protein Sbp1|Schizosa...    27   2.3  
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce...    27   4.0  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    27   4.0  
SPAC21E11.07 ||SPAC2C4.01|glycine cleavage T-protein|Schizosacch...    27   4.0  
SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    27   4.0  
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    26   5.2  
SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr 2...    26   5.2  
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S...    26   6.9  
SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyc...    26   6.9  
SPBC1539.05 |cog3||Golgi transport complex subunit Cog3 |Schizos...    26   6.9  
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe...    25   9.2  
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe...    25   9.2  
SPCC584.02 |cuf2||Cu metalloregulatory transcription factor Cuf2...    25   9.2  
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe...    25   9.2  
SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid aminotr...    25   9.2  
SPBC19F8.01c |spn7|SPBC21.08c|septin Spn7|Schizosaccharomyces po...    25   9.2  
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe...    25   9.2  
SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyce...    25   9.2  

>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
           Eme1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 29.1 bits (62), Expect = 0.74
 Identities = 30/121 (24%), Positives = 49/121 (40%)
 Frame = +1

Query: 31  SSSKIY*FRMACSVSDTPSLKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVA 210
           S SK+    +A S  +  ++ D P+ +T   S L+ F+T  +    +  + VLPS  D  
Sbjct: 26  SPSKVCRDNIALSEHNVITVLDTPQRSTQCDSLLKSFSTPLV----SGSEDVLPSPRDAL 81

Query: 211 TEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKH 390
               +KS+ D +    +S  + T T   NP    + I         L+         L H
Sbjct: 82  NITNKKSVTDNLLLSLTSSNQSTNT-NLNPSSRVEIINLNSSPPNSLSSQPKHQEFHLFH 140

Query: 391 T 393
           T
Sbjct: 141 T 141


>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
 Frame = +1

Query: 97  LPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSA-------EDVATEKTQKSLFDGIEKF 255
           L K +TDL +Q E FN  C +  D +  +V   A       E V  E+    + DG+E  
Sbjct: 428 LNKWSTDLTTQTEVFNKLCDQVSDWDRTLVDNGALISKLYTETVEAEQMSNRIDDGLEYV 487

Query: 256 DSSQ 267
            SSQ
Sbjct: 488 SSSQ 491


>SPBC1773.07c |sbp1|yrb1|Ran GTPase binding protein
           Sbp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 215

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 17/51 (33%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
 Frame = +1

Query: 193 SAEDVATEKTQ--KSLF-DGIEKFDSSQLKHTETQEKNPLPDKDAIEAEKE 336
           ++EDVA+++T+  K++F DG+ K ++     T  ++K    D+DA  A  E
Sbjct: 22  ASEDVASKQTEEAKAVFGDGVAKQENKSGASTNDEKKPAEGDEDAEPASPE 72


>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 674

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = -3

Query: 215 SVATSSADGSTIFSLVSTSRRQLVLKPSS*LFRSVATLGRSFRE 84
           SV   + DG  +  +  +++RQ V+ P +  F +   +GR F+E
Sbjct: 86  SVVAFTKDGERLVGV--SAKRQAVINPENTFFATKRLIGRRFKE 127


>SPAC29B12.07 |sec16||multidomain vesicle coat component
           Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
 Frame = +1

Query: 163 VDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLK---HTETQEKNPLPDKDAIEAEK 333
           VD ++K+   S ED++ E  + +L  G E + SSQ +   + ET  K P P+ + IE   
Sbjct: 145 VDEDDKL---SEEDLSKEDLETTL-KGDENYSSSQKEIYDNDETIPKPPSPEVEKIETST 200

Query: 334 E-KNKFLNGIENFDPTKLK-HTGDV 402
             +N ++   +  D   ++  T D+
Sbjct: 201 SVENAYITNSQYNDTLDMEDQTSDL 225


>SPAC21E11.07 ||SPAC2C4.01|glycine cleavage
           T-protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 325

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
 Frame = +1

Query: 421 HKGRH*AREISLNHYFITVTRKCI-SLVSPYFNIDVSQ-IDLRRPLQVL 561
           HKG +  +E+++  Y+  VTRK I   + P +  + SQ I+   PL ++
Sbjct: 215 HKGCYLGQELTVRTYYTGVTRKRIFPFIIPNYEDNPSQVIEPSAPLSIV 263


>SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 398

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 4/75 (5%)
 Frame = +1

Query: 82  PSLKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGI----E 249
           P  K L K+  +L+S L+    SCL+D  T+ K ++       +EKTQ+ +FD +    +
Sbjct: 14  PGNKCLAKL-NELESILKDAKKSCLKDPTTSMKELV-----ACSEKTQQ-VFDDLKRTEK 66

Query: 250 KFDSSQLKHTETQEK 294
           KF +S  +  +T EK
Sbjct: 67  KFHTSLNRFGKTLEK 81


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1517

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +1

Query: 349  LNGIENFDPTKLKHTGDVRKEPAPHKGRH*AREI-SLNHYFI 471
            LN I+N  PTK  +   +     PH GR  A  I SL  YF+
Sbjct: 1165 LNYIQNQQPTKWPNLSCLENLMIPHDGRISAFYIASLQKYFV 1206


>SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 426

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -2

Query: 222 GLLSGNVFSRRKHNLFIGVDVTETAGVEAFELTLQ 118
           G ++G  +S    +LFIGVD     G+  F   LQ
Sbjct: 385 GEIAGTAYSSSGDSLFIGVDDPMLGGILEFRRPLQ 419


>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 660

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 10/43 (23%), Positives = 23/43 (53%)
 Frame = +1

Query: 181 IVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPD 309
           + L S ED+ +  T+ S+   + +    +++HT  + K  +P+
Sbjct: 134 VALKSEEDIPSSVTRLSVVKLVNRVTYERMRHTMLEFKRSIPE 176


>SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 703

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +3

Query: 384 EAHGRRAKRTRSP-QRTSLSKRNQLEPLLYNSYSQ 485
           E++ ++A + + P +R  +SK   LE   YN Y Q
Sbjct: 170 ESYAKQAIKQKQPFERLVISKEGLLEMFRYNKYKQ 204


>SPBC1539.05 |cog3||Golgi transport complex subunit Cog3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 735

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 19/86 (22%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
 Frame = +1

Query: 124 SQLEGFNTSCLR-DVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEK-N 297
           S ++ F  + L  + +  +K V+     +  E  ++ LF      ++   +++ T+E  N
Sbjct: 400 SYIQSFQNAILEGEREDVDKKVVEFLNPLVLELQERLLFVVQTAIETDIQRYSPTEEDLN 459

Query: 298 PLPDKDAIEAEKEKNKFLNGIENFDP 375
           P+ D  ++  + EK +  N  E  DP
Sbjct: 460 PIADDKSLLFDLEKLRLNNDEEKLDP 485


>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 224 WVFSVATSSADGSTIFSLVSTSRRQL 147
           W+FSVA S      IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147


>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 224 WVFSVATSSADGSTIFSLVSTSRRQL 147
           W+FSVA S      IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147


>SPCC584.02 |cuf2||Cu metalloregulatory transcription factor
           Cuf2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 177

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +1

Query: 187 LPSAEDVATEKTQKSLFDGIEKFDSSQLKHTE 282
           LP +ED+   +   SL D   + D+SQL   E
Sbjct: 117 LPISEDILGYRKPLSLTDASNRIDASQLNEKE 148


>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 224 WVFSVATSSADGSTIFSLVSTSRRQL 147
           W+FSVA S      IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147


>SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid
           aminotransferase Eca39|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 380

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 223 QKSLFDGIEKFDSSQLKHTETQEKNPLPD 309
           Q +   G +  DSS +K T  +E  PLP+
Sbjct: 3   QTAALHGPKPMDSSHIKVTNVKELKPLPE 31


>SPBC19F8.01c |spn7|SPBC21.08c|septin Spn7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
 Frame = +1

Query: 163 VDTNEKIVLPSAEDVATEKTQKSLFD-GIEKFDSSQLKHTETQEKNPLPDKDAIEAEKEK 339
           VD    +   S  +  T+  Q +    G+E     +  H  T  +N LP+    E E +K
Sbjct: 353 VDNTSSLKCDSYGNTKTKTNQLNCEQIGLEVISPKEFPHRTTSSRNSLPNNTTKELEMKK 412


>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 224 WVFSVATSSADGSTIFSLVSTSRRQL 147
           W+FSVA S      IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147


>SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 497

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -3

Query: 227 FWVFSVATSSADGSTIFSLVSTSRRQLVLKPSS 129
           FW +S+  S   G  I SL +   RQ + +PSS
Sbjct: 83  FWGYSLTFSHEGGPYIGSLANFGLRQTLGRPSS 115


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,182,430
Number of Sequences: 5004
Number of extensions: 67216
Number of successful extensions: 238
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 238
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)