Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4434
         (735 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81077-9|CAD56582.1|  565|Caenorhabditis elegans Hypothetical pr...    29   3.4  
U38378-3|AAA79750.2|  335|Caenorhabditis elegans Hypothetical pr...    29   4.5  
U38378-2|AAR12974.1|  403|Caenorhabditis elegans Hypothetical pr...    29   4.5  
Z19154-2|CAA79554.1|  504|Caenorhabditis elegans Hypothetical pr...    28   7.9  
CU457741-7|CAM36348.1|  710|Caenorhabditis elegans Hypothetical ...    28   7.9  

>Z81077-9|CAD56582.1|  565|Caenorhabditis elegans Hypothetical
           protein F36A2.9b protein.
          Length = 565

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 19/66 (28%), Positives = 27/66 (40%)
 Frame = -1

Query: 414 FLYIKIFAGRHPFF*TYHIPNT*SRSTSAMKE*HRVIKIEPSKACMGERNQGSSGIEVVP 235
           F Y K  AG H  F     P    +   A KE  + +    +     E+    +GI++ P
Sbjct: 488 FFYQKSKAGNHGRFEIVEEPQ--KKLEEAQKEEQKALLTRQNTRAQSEQATTPTGIQLAP 545

Query: 234 ESVGRH 217
             VGRH
Sbjct: 546 IPVGRH 551


>U38378-3|AAA79750.2|  335|Caenorhabditis elegans Hypothetical
           protein R11F4.2a protein.
          Length = 335

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 598 FYEH*VGVTLITYLLICIERKILYLILN 515
           FYE    VT + Y+L+C  R  +Y + N
Sbjct: 278 FYETCTDVTSVLYILVCATRLFVYYLFN 305


>U38378-2|AAR12974.1|  403|Caenorhabditis elegans Hypothetical
           protein R11F4.2b protein.
          Length = 403

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 598 FYEH*VGVTLITYLLICIERKILYLILN 515
           FYE    VT + Y+L+C  R  +Y + N
Sbjct: 278 FYETCTDVTSVLYILVCATRLFVYYLFN 305


>Z19154-2|CAA79554.1|  504|Caenorhabditis elegans Hypothetical
           protein C40H1.3 protein.
          Length = 504

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/40 (42%), Positives = 23/40 (57%)
 Frame = -1

Query: 345 SRSTSAMKE*HRVIKIEPSKACMGERNQGSSGIEVVPESV 226
           S++T+   E  RVI  EPSK     +NQ  S I  VPE++
Sbjct: 227 SKATTRSPE-RRVIPTEPSKPKTTRKNQRLSTIGHVPEAI 265


>CU457741-7|CAM36348.1|  710|Caenorhabditis elegans Hypothetical
           protein C42C1.7 protein.
          Length = 710

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 24/95 (25%), Positives = 44/95 (46%)
 Frame = -3

Query: 643 VDIFTHPPKIQVNIFFYEH*VGVTLITYLLICIERKILYLILNFIPYIFTVSRSVNEVEE 464
           +DIFTH   + V I FY     + LI  L   + +   Y +L     + ++S      + 
Sbjct: 136 MDIFTHTWSLSVEIQFYFVVPFIFLIGNLFSSVFKFGYYCLLG----VISISYYFTSPQT 191

Query: 463 IRYLALKDRIVDQTPGVLVYKNICRKASIFLDIPH 359
             + ++  RI     G++VY    +K++  LD+P+
Sbjct: 192 TAFNSVFARIWQFLIGMIVYLIYFKKSTKPLDLPY 226


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,788,393
Number of Sequences: 27780
Number of extensions: 357511
Number of successful extensions: 712
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 712
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)