Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4432
         (333 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    27   0.99 
SPAC23A1.14c |||cystathionine gamma-synthase |Schizosaccharomyce...    25   2.3  
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces...    25   3.0  
SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subun...    25   4.0  
SPBC119.08 |pmk1|spm1|MAP kinase Pmk1 |Schizosaccharomyces pombe...    24   7.0  

>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 26.6 bits (56), Expect = 0.99
 Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
 Frame = -2

Query: 221  HPRNRTSTNEKFDTLLGCYSKR---IVYGHHTSMYCR*F*SYCRRLAPF 84
            HP   +  NE++D LLG    +     YG H S       SY  RL PF
Sbjct: 1984 HPERESQFNERYDLLLGLNDSQQQPFHYGTHYSS-AMIVCSYLIRLRPF 2031


>SPAC23A1.14c |||cystathionine gamma-synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 398

 Score = 25.4 bits (53), Expect = 2.3
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -2

Query: 212 NRTSTNEKFDTLLGCYSKRIVYGHHTSMYCR*F 114
           N+ +T+E+F T LG  S  I+  +H S+  + F
Sbjct: 281 NKLATDEQFATSLGIDSSLILEVYHNSLQTKEF 313


>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 576

 Score = 25.0 bits (52), Expect = 3.0
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 187 NFSFVDVRFRG*SYGRFSSRY*AARLLGVLNNYE 288
           N+ F +  FRG ++  F S   A  ++ VLN YE
Sbjct: 264 NYHFDNGVFRGLAFANFHSPEEAKTVVQVLNGYE 297


>SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subunit
            Rpc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1165

 Score = 24.6 bits (51), Expect = 4.0
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 232  RFSSRY*AARLLGVLNNYEEVPEIQMGRCP 321
            +FSSR+    + GV+   E++P    G CP
Sbjct: 927  KFSSRHGQKGVCGVIVQQEDMPFNDQGICP 956


>SPBC119.08 |pmk1|spm1|MAP kinase Pmk1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 422

 Score = 23.8 bits (49), Expect = 7.0
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = +3

Query: 48  KNPSFNKSYFQLKWSKTSTITLKSSAVH 131
           +NP F   Y   +W +   I L  S+ H
Sbjct: 180 ENPGFMTEYVATRWYRAPEIMLSFSSYH 207


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,329,843
Number of Sequences: 5004
Number of extensions: 23865
Number of successful extensions: 74
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 93942212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)