Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-4432
(333 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0621 - 35147070-35148359,35148499-35148579,35148665-351487... 27 2.8
02_05_0752 + 31491462-31491921,31492177-31492271,31492346-314925... 27 2.8
08_02_1331 + 26195949-26196132,26196606-26196710,26197270-261981... 27 4.9
04_04_1236 + 31990128-31990268,31990291-31990674,31991284-31991469 27 4.9
08_02_1121 + 24457413-24457528,24458395-24458552,24458927-244590... 26 6.4
05_03_0449 - 14161812-14162902,14163121-14163153,14164248-141644... 26 6.4
11_06_0526 - 24585161-24587119 26 8.5
08_02_1257 - 25646029-25646054,25646139-25646236,25646609-256467... 26 8.5
04_03_0213 + 12709396-12709564,12709659-12710217,12710312-127106... 26 8.5
>03_06_0621 -
35147070-35148359,35148499-35148579,35148665-35148741,
35148792-35149298,35149405-35150278
Length = 942
Score = 27.5 bits (58), Expect = 2.8
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Frame = +3
Query: 36 IINSKNPSFNKSYFQLKWSKTSTIT--LKSSAVHACVVTVNYSL*ITPKKCIKFFVC*CS 209
I + ++ Y KWS T+ KS + +ACV T + L +T K + C CS
Sbjct: 387 IYGLEKSDLSEEYGVWKWSVTNLTCEDAKSKSAYACVSTNSECLDVTHGKLYIGYRCKCS 446
Query: 210 I 212
+
Sbjct: 447 L 447
>02_05_0752 +
31491462-31491921,31492177-31492271,31492346-31492573,
31493070-31493157,31493275-31493326,31493985-31494050,
31494382-31494536,31494633-31494703,31494820-31495017,
31495103-31495144,31496223-31496324,31496514-31496603,
31496708-31496783,31497299-31497395,31497488-31497557,
31497676-31497852,31498156-31498239,31498971-31499093,
31500143-31500226,31500318-31500502,31500592-31500730,
31500841-31500900,31500969-31501040,31501136-31501197,
31501839-31501945,31501984-31502058,31502800-31503248
Length = 1168
Score = 27.5 bits (58), Expect = 2.8
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -1
Query: 327 VHWAPAHLNFRNFFIIVKHSQQTSCSV 247
V W +L ++NF VK+ +T+CSV
Sbjct: 124 VPWEKGNLTWQNFPYYVKYDARTTCSV 150
>08_02_1331 +
26195949-26196132,26196606-26196710,26197270-26198127,
26198669-26199458,26200240-26200329,26200636-26200712,
26200797-26201383
Length = 896
Score = 26.6 bits (56), Expect = 4.9
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = +2
Query: 233 DSVQDTEQLVCWECLTIMKKFLKFKWAGAQCT 328
D QD E L ECL + + +WA C+
Sbjct: 503 DKAQDIESLASIECLELHFEAKMIEWANENCS 534
>04_04_1236 + 31990128-31990268,31990291-31990674,31991284-31991469
Length = 236
Score = 26.6 bits (56), Expect = 4.9
Identities = 8/21 (38%), Positives = 15/21 (71%)
Frame = +2
Query: 227 MGDSVQDTEQLVCWECLTIMK 289
+G SVQ+ +Q+ WE +T ++
Sbjct: 176 VGSSVQEAKQMAAWEAVTFLR 196
>08_02_1121 +
24457413-24457528,24458395-24458552,24458927-24459042,
24459735-24460400
Length = 351
Score = 26.2 bits (55), Expect = 6.4
Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +3
Query: 36 IINSKNPSFNKSY-FQLKWSKTSTITLKSSAVHACVVTVNY 155
I+ S++P F + LK + ST+ + ++ AC +NY
Sbjct: 203 ILASRSPVFRSMFSHDLKEKELSTVDISDMSLEACQAFLNY 243
>05_03_0449 -
14161812-14162902,14163121-14163153,14164248-14164457,
14166348-14167011,14167129-14167287,14167449-14167563,
14167672-14167867,14167965-14168286,14168695-14168865,
14169486-14169495,14169932-14170285,14172429-14172553
Length = 1149
Score = 26.2 bits (55), Expect = 6.4
Identities = 15/29 (51%), Positives = 21/29 (72%), Gaps = 2/29 (6%)
Frame = -1
Query: 177 SWVLFKANSLR--SPHKHVLQMILKLLST 97
S +L A+ LR + +HV+QM+LKLLST
Sbjct: 416 SKILCGASLLRGWNIQEHVIQMVLKLLST 444
>11_06_0526 - 24585161-24587119
Length = 652
Score = 25.8 bits (54), Expect = 8.5
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Frame = +2
Query: 218 GEAMGDSVQDTEQLV--CWECL--TIMKKFLKFKWAGAQCTG 331
G+ D V D L + CL ++ K LKFKW+G C G
Sbjct: 527 GDRHVDEVPDIPALSRRSFTCLQRSLKKVSLKFKWSGDDCFG 568
>08_02_1257 - 25646029-25646054,25646139-25646236,25646609-25646700,
25646786-25646893,25647212-25647346,25647648-25647752,
25647951-25648088,25648865-25648963,25649079-25649195,
25649446-25649610,25649955-25650014,25650395-25650559,
25650636-25650746,25651220-25651333,25651466-25651531,
25651857-25651994,25652303-25652386,25652468-25652510,
25652621-25652676,25652772-25652880,25652944-25653026,
25653127-25653210,25653383-25653454,25653557-25653634,
25653717-25653800,25653892-25653962,25654095-25654164,
25654314-25654403,25654500-25654661,25654702-25654817,
25654946-25654988,25655069-25655185,25655897-25656046
Length = 1082
Score = 25.8 bits (54), Expect = 8.5
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 4/30 (13%)
Frame = +2
Query: 179 VYQIFRLLMFDFAGEAM----GDSVQDTEQ 256
+YQI LL+FDF+G ++ DS +D E+
Sbjct: 932 IYQIAILLIFDFSGRSILRLQNDSREDAEK 961
>04_03_0213 +
12709396-12709564,12709659-12710217,12710312-12710606,
12710688-12710786,12710864-12711203,12711571-12711812
Length = 567
Score = 25.8 bits (54), Expect = 8.5
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +2
Query: 251 EQLVCWECLTIMKKFLKFKWAGAQC 325
E L+ W K L +WAGA+C
Sbjct: 502 EGLLGWAMAETAKSHLSARWAGAEC 526
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,047,822
Number of Sequences: 37544
Number of extensions: 135593
Number of successful extensions: 290
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 285
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 290
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 459426840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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