Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4432
         (333 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.              20   6.8  
DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.              20   6.8  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      20   6.8  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    20   9.1  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    20   9.1  

>DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.
          Length = 135

 Score = 20.2 bits (40), Expect = 6.8
 Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = -1

Query: 117 ILKLLSTSCSILIENNFY*NWGFLNLLF-RYQNKK 16
           ++K L   CS++ + N Y  +  L   F +Y+  K
Sbjct: 96  VIKKLVAECSVISDANIYIRFNKLVKCFGKYKTMK 130


>DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.
          Length = 135

 Score = 20.2 bits (40), Expect = 6.8
 Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = -1

Query: 117 ILKLLSTSCSILIENNFY*NWGFLNLLF-RYQNKK 16
           ++K L   CS++ + N Y  +  L   F +Y+  K
Sbjct: 96  VIKKLVAECSVISDANIYIRFNKLVKCFGKYKTMK 130


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 20.2 bits (40), Expect = 6.8
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +2

Query: 119 ICSTCLCGDRKLFALNNTQEVY 184
           +C+ C    R L +LNN + +Y
Sbjct: 403 VCALCHKVFRTLNSLNNHKSIY 424


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 19.8 bits (39), Expect = 9.1
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +3

Query: 96  TSTITLKSSAVHACVVTVN 152
           T TI + ++ + AC  T+N
Sbjct: 146 TGTIGIGNTTIQACPYTLN 164


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 19.8 bits (39), Expect = 9.1
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -1

Query: 171 VLFKANSLRSPHKHVLQMILKLLSTSCSI 85
           V +K+N L  P+  VL +   +  +SC+I
Sbjct: 125 VRYKSNVLIYPNGDVLWVPPAIYQSSCTI 153


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,666
Number of Sequences: 438
Number of extensions: 1500
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7466580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)