Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4430
         (576 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A10.07c |||sphingolipid biosynthesis protein|Schizosacchar...    30   0.28 
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    28   1.1  
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos...    27   2.6  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    25   6.0  
SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces pom...    25   7.9  
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    25   7.9  
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch...    25   7.9  

>SPAPB1A10.07c |||sphingolipid biosynthesis
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 29.9 bits (64), Expect = 0.28
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = -3

Query: 316 YMFFCLDNCSFNCHYVNTIPILV 248
           Y+FFC  +CSFN   +NTI +L+
Sbjct: 221 YVFFCASSCSFN-QAINTINLLL 242


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -2

Query: 119 RHYGSSRSINGAFRYHKYRSP-SSTNPSLATKGSTSELTH 3
           R+YG +    G   Y+ Y +P SS+ PS+ ++ +T   T+
Sbjct: 58  RYYGRAAETGGTPTYYGYATPTSSSEPSIFSESATPSETN 97


>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
           Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = -2

Query: 128 LKTRHYGSSRSINGAFRYHKYRSPSSTNPSLATKGSTSE 12
           L   ++GS+ S+  A  + KY SPS  + +  ++ ++ E
Sbjct: 614 LSNTNFGSNNSLRHAKSFSKYYSPSHKDSNKTSRNTSKE 652


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 124 KHVITDPPDPLTVLLGTTSTGH 59
           +H++ +PP PLTVL      GH
Sbjct: 499 RHILDNPPKPLTVLDIYFQIGH 520


>SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 558

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 508 LVNCLYIKRAIEDVHSNKKK 567
           L NC+Y+  A E    NKKK
Sbjct: 459 LDNCIYVYSAYEKYRQNKKK 478


>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = -2

Query: 167 EIGRGVLVPTSTSLKTRHYGSSRSINGAFRYHKYRSPSSTNPSLATKGSTSE 12
           E+G  V   T+ ++     G    +NG  ++H  R  +S+   L++ GS +E
Sbjct: 640 EVGEPVNQDTAGNMSDSSEGGEAVVNGNSQHHHNRDDASS--GLSSNGSENE 689


>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
           Zds1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 938

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 11/45 (24%), Positives = 22/45 (48%)
 Frame = -2

Query: 176 FTAEIGRGVLVPTSTSLKTRHYGSSRSINGAFRYHKYRSPSSTNP 42
           F     R  +  T  S++T H G + +++G   +   + P+ T+P
Sbjct: 306 FLQRSSRTTIRRTGASIRTIHRGKTSTLSGNRSHSILQKPTDTSP 350


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,175,348
Number of Sequences: 5004
Number of extensions: 43384
Number of successful extensions: 82
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)